Gene detail information of Glyur001889s00039825 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G13330.1 | 2.00E-81 | Arabidopsis Hop2 homolog |
| NR | XP_004514499.1 | 1.43E-119 | PREDICTED: homologous-pairing protein 2 homolog [Cicer arietinum] |
| Swissprot | tr|Q9FX64|HOP2_ARATH | 5.00E-102 | Homologous-pairing protein 2 homolog |
| trEMBL | tr|V7CJQ8|V7CJQ8_PHAVU | 4.00E-118 | Uncharacterized protein {ECO:0000313|EMBL:ESW29588.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01889 | 37589 | 39100 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001889s00039825.1 | PF07106.8 | TBPIP | 27 | 166 | 1.20E-38 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 2.513 |
| SRR1783600 | control | 2.423 |
| SRR1783602 | moderate drought stress | 1.384 |
| SRR1811619 | moderate drought stress | 1.285 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.591 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 4.853 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 5.757 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 5.691 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 4.151 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 4.053 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.463 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.873 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 6.251 |
| SRR2868004 | Drought Stress (root) | 5.016 |
| SRR2967015 | Control (root) | 5.335 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.682 |
| SRR9715740 | Leaf | 0.666 |
| SRR9715741 | Leaf | 0.905 |
| SRR9715739 | Root | 1.229 |
| SRR9715742 | Root | 0.948 |
| SRR9715743 | Root | 0.702 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 48.906 |
| SRR8749028 | MeJA induced 9h | 29.699 |
| SRR8749029 | MeJA induced 9h | 46.352 |
| SRR8749030 | Uninduced | 24.491 |
| SRR8749031 | Uninduced | 30.889 |
| SRR8749032 | Uninduced | 19.955 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 6.053 |
| SRR8400027 | Control - Root | 5.407 |