Gene detail

Gene detail information of Glyur001888s00038687

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G00030.1	2.00E-75	Plastid-lipid associated protein PAP / fibrillin family protein
NR	XP_007140979.1	1.39E-126	hypothetical protein PHAVU_008G157000g [Phaseolus vulgaris]
Swissprot	tr\|O81304\|PAP11_ARATH	1.00E-94	Probable plastid-lipid-associated protein 11
trEMBL	tr\|V7B7Y4\|V7B7Y4_PHAVU	5.00E-127	Uncharacterized protein {ECO:0000313\|EMBL:ESW12973.1}

Sequence

Transcript Sequence

>Glyur001888s00038687.1
GCATAAAAAAATAAAAATGATTATACTAACCGCCAATTGTTTCCAAGTTCACTCACTCCACACACTCACTACTCCCACACCACACACTTTAACGCCAATGGAACTCAATTATCACCATCACCACCACCATACATCCCCATGGCCATCACCACCACCACAACAACCCTTCTCCTTCCCAACTCCTTCAACACTCAAAACCCTAACATTAACAAACCCCTCACTCGCCGCTACTCTCACCCGAGGTTCACCTGTTCCTCCGTGACAGCCCAATCCCGATCCTCCGCCAGGGACCACCTCCTCGCCCTCATCTCCGACCAGGACCGCGGCCTCAGGACACAGAGCGACCCGGCGAGGCGAGCGTCGATTGTGGAGGCGATCGACGCGATGGCCGCCCTTGGTGCCGGTTCCGTCACCACGGGAGACTCCCTCTCCGGCACTTGGCGGCTGCTCTGGACCACCGAGAAGGAACAGCTCTTCATTGTAGAGAAGGCTCCCTTGTTCGGAACCCGTGCCGGTGACGTATTGCAGGTCATAGACGTTCGGGGAAGGACTCTCAACAATGTAATCACATTCCCTCCCGATGGAGTTTTCTTCGTTCGATCTAATATCGAGATTGCGTCGCCGCAGAGAGTGAATTTCAGATTTATTAGTGCAGTGTTACGCGGGAAGAACTGGGACATACCATTGCCACCATTTGGACAGGGTTGGTTTGATACTGTATACATTGATGATGACCTTCGAGTTGTAAAGGATATCAGGGGAGACTATTTAGTTGTTGACCGAGCTTCCTATAGCTGGAAAGAATGAGTGAAATCTTCACTGTCTGTTACCCGATCCAGAAGAAGCCTGAATCAGCTGAGTCAATTCAGCCTGCTAGAGCCGCTTAACTGCATCTAACTGTTTCTGTTATTTTCAGTTATCTTCTCTTGTTGCTTAGTATAGTTATAGCGTACACCTTAGCTCAGGATACTGCACAATGCAATTATCCTCATCATATAAATACTGTAAACTGCTATTTTCACATTTAACGATTGTGATTCTTTCTTGCTTTTCTCTATTTTCCTCTCTGATTAGTTTCTTATGATGGTATCAGAGCTCTTCCTATAGAGCTCTGCTGCGCATCCAATTAAGTGGCTCTAGCAGGCTGAATTGGCTTAGCTGATTCAGCTTCTTTTGGTTCAAGTAACACTGTCATTGTTCGCTCATCTTC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01888	2385	8895	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001888s00038687.1	PF04755.7	PAP_fibrillin	49	213	2.30E-36

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.306
SRR1783600	control	0.844
SRR1783602	moderate drought stress	0.763
SRR1811619	moderate drought stress	0.499

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	7.742
DRR006520	Root Summer glycyrrhizin high producing strain	7.644
DRR006521	Root Winter glycyrrhizin high producing strain	8.887
DRR006522	Root Winter glycyrrhizin high producing strain	8.798
DRR006523	Root Summer glycyrrhizin low producing strain	12.962
DRR006524	Root Summer glycyrrhizin low producing strain	12.835
DRR006525	Leaf Summer glycyrrhizin high producing strain	37.152
DRR006526	Leaf Summer glycyrrhizin high producing strain	36.879

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	12.513
SRR2868004	Drought Stress (root)	12.738
SRR2967015	Control (root)	10.130

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.000
SRR9715740	Leaf	0.000
SRR9715741	Leaf	0.054
SRR9715739	Root	0.000
SRR9715742	Root	0.000
SRR9715743	Root	0.000

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	9.292
SRR8749028	MeJA induced 9h	3.157
SRR8749029	MeJA induced 9h	2.597
SRR8749030	Uninduced	0.581
SRR8749031	Uninduced	0.127
SRR8749032	Uninduced	0.609

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.465
SRR8400027	Control - Root	0.031