Gene detail

Gene detail information of Glyur001887s00036743

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G06710.1	3.00E-43	homeobox from Arabidopsis thaliana
NR	XP_003595805.1	7.17E-110	Homeobox-leucine zipper protein HAT14 [Medicago truncatula]
Swissprot	tr\|P46665\|HAT14_ARATH	7.00E-81	Homeobox-leucine zipper protein HAT14
trEMBL	tr\|G7IJ30\|G7IJ30_MEDTR	3.00E-110	Homeobox associated leucine zipper protein {ECO:0000313\|EMBL:AES66056.1}

Sequence

Transcript Sequence

>Glyur001887s00036743.1
ATGGAGCTTGGTTTGAGCTTAGGAGACTCNAATTCAAGGCCTTTCGCTATTGATCAGTTCAATGAAAAGCCTCGTGATCATCATCAAGCTTCTTCTTCCAGCCAAGTACTGGGCTCAGGCTTCAACACCACCTTATCAATTGGTCCAATACAAAGAGATCATCAACAACAAGAAAAAGCAAAGCCAAAAAAGGACAATATTATTAACAGCAGCAACAACAATAGTGACAGAGGTGAAGTTCACCATGAAGCCACAGATGAATACCCAAGGAGTTTATCAACAGAGTTTGGGGGTTCATCAAGGGGCTTGGACGTGAACGCGGTGCCGGTGCCGGTGGCGGCTGCGGCTGCGGGGGCGGAGGATGAGGGGGAGGAAGGGGCGGCGCTGTCGTCGTCTCCGAACAGCGCGGCATCTTCATTTCAGATGGATCTCTGTATATACAGCAGAGGAGGAGGAGGTGGGAGTTTGAGTGGTTCGGGAAACAAGAGGGAGTTATCTGATGGTGAAAGGGGTTCAATATCAAGAGCGAGTGATGAGGATGAGAACGGTACTGGTGGGAGTGGGTCCAACAGTACAAGGAAGAAACTCAGGCTCTCCAAGGACCAATCTGCTTTCCTTGAAGAGAGCTTCAAAGAGCACAACACTCTTAACCCTAAACAAAAACTCGCTCTTGCTAAACAACTCAATCTTCGCCCTCGCCAAGTAGAAGTCTGGACTAAGTTGAAGCAAACAGAAGTGGACTGTGAATACTTGAAGAGATGCTGTGAGACACTGACAGAAGAGAATAGGAGGCTTCACAAGGAGCTTCAAGAATTGAGGGCTTTAAAGACATCAAACCCATTCTACATGCAATTACCGGCAACTACCTTAACCATGTGTCCTTCTTGTGAGCGCGTTGCAACAAACTCCACCGCCACTAATTCTTCTGTCACTACAAGTGCCACAATCAATGCTAATAATAACAATACTACTGAGGATCACTCTAACTCAAAAGCCAGTTCTGTNTCACCCTTTGGAAAACCCAGGTTTCATCCATTTGCTCACACCAGTCCACACCATCTTGAATTGAATTGAAATTGAATTGATTATATACTGAAGATCAAGACTTTTCAATAGAAGGCTGCTGATTGGAAATATTTGATTTCATTTTTGTATATAGGGAAGTTCTGAGAGGCTGATCATAGTTATCTTTTCTTTTTTGATTTTGTTTTTTTGTCCCTTTCCTTTTCTTTTGGGGGGTTCGTATAGAATTCTGATAATTGGATTTTGTTTTTTGTTTTTGTTTTTCTGATTTGAATATCTTTATATATTCCTTCTTTCTCTAGTTTTATTGANGGTG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01887	14628	17089	+

Gene family

Gene family	subfamily
Transcription Factors Family	HB

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006355 regulation of transcription, DNA-templated

molecular_function

GO:0003677 DNA binding

GO:0003700 transcription factor activity, sequence-specific DNA binding

GO:0043565 sequence-specific DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001887s00036743.1	PF00046.24	Homeobox	193	238	2.10E-08
Glyur001887s00036743.1	PF02183.13	HALZ	242	284	1.70E-17

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.130
SRR1783600	control	3.136
SRR1783602	moderate drought stress	7.518
SRR1811619	moderate drought stress	7.637

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.823
DRR006520	Root Summer glycyrrhizin high producing strain	4.029
DRR006521	Root Winter glycyrrhizin high producing strain	4.927
DRR006522	Root Winter glycyrrhizin high producing strain	4.728
DRR006523	Root Summer glycyrrhizin low producing strain	10.061
DRR006524	Root Summer glycyrrhizin low producing strain	9.833
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.014
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.930

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	17.217
SRR2868004	Drought Stress (root)	28.437
SRR2967015	Control (root)	49.708

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	4.090
SRR9715740	Leaf	10.416
SRR9715741	Leaf	15.489
SRR9715739	Root	2.380
SRR9715742	Root	4.527
SRR9715743	Root	3.152

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	28.508
SRR8749028	MeJA induced 9h	57.887
SRR8749029	MeJA induced 9h	39.456
SRR8749030	Uninduced	7.988
SRR8749031	Uninduced	8.947
SRR8749032	Uninduced	7.371

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	14.650
SRR8400027	Control - Root	12.106