Gene detail

Gene detail information of Glyur001885s00035912

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G22830.1	5.00E-91	heat shock transcription factor A6B
NR	KHN02551.1	0	Heat stress transcription factor A-6b [Glycine soja]
Swissprot	tr\|Q9LUH8\|HFA6B_ARATH	9.00E-123	Heat stress transcription factor A-6b
trEMBL	tr\|I1N9K5\|I1N9K5_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA19G34210.1}

Sequence

Transcript Sequence

>Glyur001885s00035912.1
AGATAACCCACTCTGTTTTTTTTTTTTTCTTTCTCAACTGCCAAAATTAACAACTATATATATCCAAAGTCCCCCTGCATCCAATTTCCAATTCTTCACTTTTTTTCTCCATGTTTCCCTGATCATCATCACTTCAAAATTCAAATGATTCAAATCCCCCCTTCCCTGAATCCCATTCNGATTACGCCTCACAGTATGCGCATTTGCAATTCTTTTAAATTTCTCCTCCTCTTCCTCCTCTGTTTTGATCACTTGTGTCAAATCCTTCCTTAATCCTTACTTCTTCATTTTTCAAGTTTCCTCATAGGACGAAACCAACGAAGATATAGAAAGAGTTGGAGTTTGTTGAGAATGAACTATCTATACCCAGTGAAGGAAGAGTACTTGGAACCAACGTTGTCTGAAGGAGGAGTAGGAGGAGGTGATGAGTCAGCAGCAATGGTTCCTGTTCCTAGGCCAATGGAGGGGCTTCATGAGGCAGGGCCACCCCCGTTTCTGACCAAGACCTNCGATGCAGTGGAGGACCCCACAACCAGTCACATAGTTTCATGGAGCAGGGGTGGTGCCAGCTTCGTGATTTGGGATCCAAATGCTTTCTCTAGGGACCTTCTCCCCAGATACTTCAAGCANAACAATTTCTCAAGCTTTGTCAGGCAACTCAACACTTATGGTTTTAGAAAAATTGATCCAGATNGGTGGGAGTTTGCAAATGAAGGGTTCCTGAGAGGGCACAGGCACCTTTTGGCAAACATAAAGAGGAGGAGGCAACTTTCCCAGCCTAGTACTAGTACTAATTCCAAACAAGCACAAGGGCAAGGTCACTGTGTTGAGGTTGGCCGTTTTGGACTAGATGANGCGATTGATCGTTTGAGGCGTGACAAGCAGGTGTTGATGATGGAGCTTGTGAAGCTGAGGCAGCAGCAACAGAACACAAGGTCCTACCTTCAGGCAATGGAGGAAAGACTAAGAGGGACAGAGATCAAGCAGCAACAGATGATGGCTTTCTTAGCTAGAGCTATGAAGAACCCAGCTTTTATCCAGCAGCTACTCCAACAGAAAGAGAAGAGAAAGGAGCTTGAAGAGGTCATGACTAAGAAGAGGAGAAGGCCAATTGAGCAAGGACCAAGTNGGGTTATTGGAGAATCTAGCAGTGGAGGTGATGGGAGGAGAGAGTTTAATCAGGAATATGGGCTTGGAGTGTCAGAGCTGGAAGTGTTGGCCATGGAAATGCAGGGTTTTGGAAGGGGGAGGAGAGAACAGGNGGAAGTGCATGAGGAACTAGAAACACAAGAGAGGCTACTGGAGAAAGAACTCGATGAAGGGTTTTGGGAGGAACTGTTTAGTGAGAGATTTGAGGGTGATCAATTAGATATTCCAACTTCTCAAGGAGATGATGAAGATGTCAATGTGTTGGCCAATCGCTTTGGTTACTTGGTTTCAAGTCCTAAATAAATGAACTGCATTCAATCAAAGATTAACCTTTTCTTCATTTAGTTCACTAGGTTCAAGGTTGCTAGCTCCCTCAAGAGGCATTCAATAAACATGCTTTGGGTCAAAATTCAGCTTTGATGTTTTGGAATTCATGCAAAAGATTTTCCAAACACACACTACACTCATATGGTGGAGTCATCATCCCAGTTGGCAAGNCAACAAAAATTACCAAGTGGAATATCTGTGGAAACCATTTAAATTTTTTTTTTTGGTGTTTCTAACCCCATCTCGTATGTCCTTTTGTAGTGACACGCGTTAAAACCTCAATTCCTCACTTTTCTCTCTGTTTGATTAGGTAGGTTGCATTGCAGCTGTTGCTTGGACAAGAACTTGTGGTAGTGATAGCGATCAATTGTTTACTCAAGATGATTCAGAAGATGATGTAGAATGGGTACGAAGTAGCTGANCTTCAAGAATCATAACTGAATGTTGCTTTTTCAATCAAAGAGCCAGTTGGTGGTTAACCTTGTCGGTTTGATTTTTTTTCTCCCTTACCACTTTTTAATTGTTTGTACTTTGTCATGTGGTCGAAAAAACAAACCGAGTCCTCTATCAACGAATTTCATGATGTTACATCTGCACCCATATTGTTAAGCATCTTTATGTGTTCATGATTCCTTTCTCATTTAAAAGTTGAAACCAAAAAACGAAAAATATATTTGCGGGCTCTCAAGATGAAACGTGTCAGAGTTAGAGCATGTCAAATAATGGAAGTGATAATTTTGGTGTCCTTCTGCTCCTAGTGTCAGGTATTCACTATCACATCCAAGGGACAAATGCATGTACACTATGTTTCTTGAGAAAATGAGAGAAGGGAATTAGAGTGGATATTCGTTTGATTGAGGAGTGGAAATAGGATAAACAAAAAAGAACCCCATGTGCAGTTTGTATTAAAGATTTTTAAGTGAAGAGAAAATATAAAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01885	24177	27262	-

Gene family

Gene family	subfamily
Transcription Factors Family	HSF

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006355 regulation of transcription, DNA-templated

GO:0009408 response to heat

cellular_component
GO:0005634 nucleus

molecular_function

GO:0003700 transcription factor activity, sequence-specific DNA binding

GO:0043565 sequence-specific DNA binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001885s00035912.1	PF00447.12	HSF_DNA-bind	48	139	4.30E-30

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	6.295
SRR1783600	control	6.400
SRR1783602	moderate drought stress	2.575
SRR1811619	moderate drought stress	2.541

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	19.406
DRR006520	Root Summer glycyrrhizin high producing strain	19.779
DRR006521	Root Winter glycyrrhizin high producing strain	3.247
DRR006522	Root Winter glycyrrhizin high producing strain	3.138
DRR006523	Root Summer glycyrrhizin low producing strain	7.101
DRR006524	Root Summer glycyrrhizin low producing strain	6.978
DRR006525	Leaf Summer glycyrrhizin high producing strain	7.749
DRR006526	Leaf Summer glycyrrhizin high producing strain	7.764

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	14.829
SRR2868004	Drought Stress (root)	22.903
SRR2967015	Control (root)	11.885

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.207
SRR9715740	Leaf	5.151
SRR9715741	Leaf	3.690
SRR9715739	Root	0.980
SRR9715742	Root	8.899
SRR9715743	Root	7.230

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.893
SRR8749028	MeJA induced 9h	5.292
SRR8749029	MeJA induced 9h	3.718
SRR8749030	Uninduced	0.183
SRR8749031	Uninduced	1.208
SRR8749032	Uninduced	0.985

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	17.081
SRR8400027	Control - Root	14.829