Gene detail information of Glyur001884s00039572 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G51570.1 | 1.00E-60 | SPFH/Band 7/PHB domain-containing membrane-associated protein family |
| NR | NP_001241478.1 | 1.77E-86 | hypersensitive-induced response protein 4-like [Glycine max] |
| COG | YP_007201322.1 | 6.00E-32 | membrane protease subunit, stomatin/prohibitin [Singulisphaera acidiphila DSM 18658] |
| Swissprot | tr|Q9FHM7|HIR4_ARATH | 1.00E-73 | Hypersensitive-induced response protein 4 |
| trEMBL | tr|C6TN05|C6TN05_SOYBN | 7.00E-87 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA16G32990.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01884 | 59 | 2237 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001884s00039572.1 | PF01145.20 | Band_7 | 12 | 136 | 1.10E-18 |
| Glyur001884s00039572.1 | PF01145.20 | Band_7 | 138 | 251 | 7.60E-16 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 16.292 |
| SRR1783600 | control | 16.127 |
| SRR1783602 | moderate drought stress | 14.937 |
| SRR1811619 | moderate drought stress | 14.644 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 33.262 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 31.915 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 108.924 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 111.174 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 29.527 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 31.525 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 19.044 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 16.975 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 24.374 |
| SRR2868004 | Drought Stress (root) | 27.294 |
| SRR2967015 | Control (root) | 34.542 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 14.395 |
| SRR9715740 | Leaf | 18.038 |
| SRR9715741 | Leaf | 14.111 |
| SRR9715739 | Root | 5.208 |
| SRR9715742 | Root | 11.854 |
| SRR9715743 | Root | 11.590 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 25.768 |
| SRR8749028 | MeJA induced 9h | 25.200 |
| SRR8749029 | MeJA induced 9h | 24.706 |
| SRR8749030 | Uninduced | 15.766 |
| SRR8749031 | Uninduced | 11.664 |
| SRR8749032 | Uninduced | 33.641 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 20.720 |
| SRR8400027 | Control - Root | 18.882 |