Gene detail information of Glyur001883s00040999 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G05220.2 | 1.00E-56 | Ribosomal S17 family protein |
| NR | XP_003535803.1 | 3.64E-84 | PREDICTED: 40S ribosomal protein S17-like [Glycine max] |
| COG | YP_004484922.1 | 5.00E-15 | 30S ribosomal protein S17 [Methanotorris igneus Kol 5] |
| Swissprot | tr|Q9LZ17|RS174_ARATH | 4.00E-75 | 40S ribosomal protein S17-4 |
| trEMBL | tr|I1L9G9|I1L9G9_SOYBN | 1.00E-84 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA10G08910.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01883 | 19035 | 20743 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001883s00040999.1 | PF00833.13 | Ribosomal_S17e | 1 | 119 | 5.00E-58 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 117.396 |
| SRR1783600 | control | 122.957 |
| SRR1783602 | moderate drought stress | 83.826 |
| SRR1811619 | moderate drought stress | 87.941 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 99.480 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 97.936 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 45.760 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 45.641 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 90.939 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 92.276 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 57.769 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 57.505 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 251.737 |
| SRR2868004 | Drought Stress (root) | 152.250 |
| SRR2967015 | Control (root) | 143.717 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 161.550 |
| SRR9715740 | Leaf | 153.908 |
| SRR9715741 | Leaf | 142.516 |
| SRR9715739 | Root | 169.142 |
| SRR9715742 | Root | 148.465 |
| SRR9715743 | Root | 157.280 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 619.087 |
| SRR8749028 | MeJA induced 9h | 298.127 |
| SRR8749029 | MeJA induced 9h | 436.607 |
| SRR8749030 | Uninduced | 83.184 |
| SRR8749031 | Uninduced | 46.036 |
| SRR8749032 | Uninduced | 74.268 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 183.316 |
| SRR8400027 | Control - Root | 150.995 |