Gene detail information of Glyur001881s00033144 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G06600.1 | 2.00E-22 | ubiquitin-specific protease 12 |
| NR | XP_006602130.1 | 3.06E-84 | PREDICTED: uncharacterized protein LOC102663175 [Glycine max] |
| Swissprot | tr|Q9FPT1|UBP12_ARATH | 4.00E-24 | Ubiquitin carboxyl-terminal hydrolase 12 |
| trEMBL | tr|K7LI62|K7LI62_SOYBN | 2.00E-90 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA10G11130.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01881 | 19649 | 23065 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001881s00033144.1 | PF00917.21 | MATH | 18 | 145 | 4.80E-12 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.000 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 8.936 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 8.960 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 8.368 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 8.150 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.314 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.260 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 9.260 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 9.271 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 8.196 |
| SRR2868004 | Drought Stress (root) | 11.399 |
| SRR2967015 | Control (root) | 6.587 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.000 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.000 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.261 |
| SRR8749028 | MeJA induced 9h | 1.425 |
| SRR8749029 | MeJA induced 9h | 1.049 |
| SRR8749030 | Uninduced | 1.850 |
| SRR8749031 | Uninduced | 0.928 |
| SRR8749032 | Uninduced | 0.627 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.047 |
| SRR8400027 | Control - Root | 0.032 |