Gene detail

Gene detail information of Glyur001881s00033142.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G22400.1	3.00E-127	PLAT/LH2 domain-containing lipoxygenase family protein
NR	KEH26311.1	0	lipoxygenase [Medicago truncatula]
Swissprot	tr\|Q41238\|LOX16_SOLTU	8.00E-152	Linoleate 9S-lipoxygenase 6 (Fragment)
trEMBL	tr\|A0A072UA69\|A0A072UA69_MEDTR	0	Lipoxygenase {ECO:0000256\|RuleBase:RU003975}

Sequence

Transcript Sequence

>Glyur001881s00033142.1
ATGGAACAGGGAAGAATATTCATGCTGGACCACCATGACTATCTCATGCCATATTTGAACCGAATAAACGCAAATGGGGTATGTGCTTATGCATCCAGGACACTTCTATTCTTAAGGAGTGATGGCATGCTTAAGCCACTGACAATAGAACTTAGCTTGCCAGGCTCATCTCTGGATCGCGAAATCCAAAGAATTTTTCTTCCAGCCAAGCAGGGAACACAAGCAGCACTTTGGCAGCTCGCTAAGGCTCATGTTTTAGCTAATGATGCTGTTTACCATCAACTAATTAGCCATTGGTTAAACGGCCATGCAGTTGTTGAACCATTTATCCTTGCTACCAAAAGAAAGCTAAGTGCAATGCATCCAATCCATCGGATATTGAGTCCTCATTTCAAAGACACCATGCACATAAATGCCTTGGCACGACTCATCCTCATTAACTCAGGAGGGATTCTGGAGAGAACATTATTTCCTGGTGAAATCTGTATGCAAATATCCTGTGATCTCTATAAAGAGTGGAAATTTAATGAACAAGGACTTCCTGCTGATCTACTCAAAAGGGGCATGGCTGTAGAAGACCCAGATGAAAACAACCCCAGTGGGATTCAGCTTCTGATGCTGGACTATCCCTATGCCATTGATGGACTTGAGATATGGGTTTCCATCAAAGCATGGGTCAAGGGCTTGTGCTCATTCTTCTACAAAGACAGTGAAGCCATCAAGGCTGATGCTGAACTCCAAGCATGGTGGTCAGAGATTAGAGCTCTTGGCCATGGTGACAAGCACAATGAGACATGGTGGTACCAAATGACAACACTCTCAAGCCTCGTAGAAGCATTAACAACCCTCATATGGGTTGCTTCTGCACGCCATGCAGCTATAAACTATGGTCAACAACAACAACATGCACACAGTGGTTATAACCCTTCAAATCATATTCATCCCACACTATGCAGGAAGTTCATTCCACTAGAAGGGACTGTTGAGTTTGGTGAGTTCCTCAAGGACCCTGATAAGTTTTTCCTCAAGATGTTACCTGATAGGTTTGAGATGAGTCTTGGTTTGGCATTGGTAGATGTTCTCTCAAAACACACTTGTGATTTTGATGGAGTGTGCTTGTTGGGGTGCCACCCATATTCACCTGGTTGGATTGACAATGAAATTGTTCGGAATAGATTTGCTGAGTTCAAAGAGGAACTGAAGGAGATTCAGACAAGGGTCTTGCAAAGAAATAGGGATCCCAAGCTTAAGAATAGGCGTGGCCCTGCAAAAATTGAGTGCCCTGAGAGGTTTAGTTATGGATCAAGAAGATGGAATCACGGGAAGAGGAATACTTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01881	14241	16466	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00454	LOX2S	EC:1.13.11.12	Linoleic acid metabolism	map00591
			alpha-Linolenic acid metabolism	map00592

Gene Ontology

biological_process
GO:0055114 oxidation-reduction process

molecular_function

GO:0016491 oxidoreductase activity

GO:0016702 oxidoreductase activity, acting on single donors with incorporation of molecular oxygen, incorporation of two atoms of oxygen

GO:0046872 metal ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001881s00033142.1	PF00305.14	Lipoxygenase	1	425	2.50E-153

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.217
SRR1783600	control	0.124
SRR1783602	moderate drought stress	0.185
SRR1811619	moderate drought stress	0.253

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.477
DRR006520	Root Summer glycyrrhizin high producing strain	0.827
DRR006521	Root Winter glycyrrhizin high producing strain	0.082
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.494
DRR006524	Root Summer glycyrrhizin low producing strain	0.328
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.126
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.069

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	0.412
SRR2868004	Drought Stress (root)	0.777
SRR2967015	Control (root)	0.542

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.075
SRR9715740	Leaf	0.047
SRR9715741	Leaf	0.072
SRR9715739	Root	0.000
SRR9715742	Root	0.277
SRR9715743	Root	0.023

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.186
SRR8749028	MeJA induced 9h	0.382
SRR8749029	MeJA induced 9h	0.073
SRR8749030	Uninduced	0.083
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.150

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	0.352
SRR8400027	Control - Root	0.371