Gene detail information of Glyur001880s00033695


Functional Annotation

DatabaseOrthologsE valueAnnotation
TAIRAT1G09700.13.00E-21dsRNA-binding domain-like superfamily protein
NRKHN20939.18.16E-94Double-stranded RNA-binding protein 4 [Glycine soja]
Swissprottr|Q6YW64|DRB4_ORYSJ3.00E-32Double-stranded RNA-binding protein 4
trEMBLtr|I1M869|I1M869_SOYBN2.00E-93Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA14G07600.1}

Sequence

Transcript Sequence
Protein Sequence


Location information (JBrowse)

ScaffoldStartEndStrand
Scaffold018803607239524+


Gene family

Gene familysubfamily
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KEGG pathway

KOEnzymeEnzyme IDpathwaymapID
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Gene Ontology

biological_process

GO:0007016  cytoskeletal anchoring at plasma membrane

GO:0016075  rRNA catabolic process


cellular_component

GO:0001726  ruffle

GO:0005925  focal adhesion


molecular_function

GO:0003723  RNA binding

GO:0004525  ribonuclease III activity

GO:0005200  structural constituent of cytoskeleton

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Pfam domain

ProteinPfam accessionPfam nameAlignment startAlignment endE-value
Glyur001880s00033695.1PF00035.20dsrm391045.70E-09
Glyur001880s00033695.1PF00035.20dsrm1251871.10E-08


Expression pattern

SRP053019

SRA ExperimentDescriptionTPM
SRR1783599control25.450
SRR1783600control25.596
SRR1783602moderate drought stress19.484
SRR1811619moderate drought stress19.347

DRP000996

SRA ExperimentDescriptionTPM
DRR006519Root Summer glycyrrhizin high producing strain27.047
DRR006520Root Summer glycyrrhizin high producing strain26.386
DRR006521Root Winter glycyrrhizin high producing strain8.073
DRR006522Root Winter glycyrrhizin high producing strain8.005
DRR006523Root Summer glycyrrhizin low producing strain21.917
DRR006524Root Summer glycyrrhizin low producing strain22.204
DRR006525Leaf Summer glycyrrhizin high producing strain14.843
DRR006526Leaf Summer glycyrrhizin high producing strain15.085

SRP065514

SRA ExperimentDescriptionTPM
SRR2867873Salt Stress (root)40.232
SRR2868004Drought Stress (root)29.961
SRR2967015Control (root)31.277

SRP215420

SRA ExperimentDescriptionTPM
SRR9715738Leaf21.548
SRR9715740Leaf24.390
SRR9715741Leaf23.240
SRR9715739Root17.602
SRR9715742Root23.677
SRR9715743Root22.794

SRP188776

SRA ExperimentDescriptionTPM
SRR8749027MeJA induced 9h38.466
SRR8749028MeJA induced 9h14.202
SRR8749029MeJA induced 9h20.832
SRR8749030Uninduced2.383
SRR8749031Uninduced1.393
SRR8749032Uninduced3.622

SRP175571

SRA ExperimentDescriptionTPM
SRR8400026NaCl treatment - Root44.839
SRR8400027Control - Root42.452

© 2021 Resource Institute for Chinese & Ethnic Materia Medica, Guizhou University of Traditional Chinese Medicine
State Key Laboratory of Plant Physiology and Biochemistry, College of Biological Sciences, China Agricultural University. All rights reserved