Gene detail information of Glyur001880s00033690 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G66400.1 | 3.00E-38 | calmodulin like 23 |
| NR | XP_003616365.1 | 4.91E-83 | Polcalcin Nic t [Medicago truncatula] |
| COG | YP_001866396.1 | 9.00E-17 | signal transduction protein [Nostoc punctiforme PCC 73102] |
| Swissprot | tr|Q9C8Y1|CML23_ARATH | 3.00E-47 | Probable calcium-binding protein CML23 |
| trEMBL | tr|G7K1X5|G7K1X5_MEDTR | 2.00E-83 | EF hand calcium-binding family protein {ECO:0000313|EMBL:AES99323.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01880 | 6051 | 6521 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001880s00033690.1 | PF13499.1 | EF-hand_7 | 5 | 63 | 1.80E-15 |
| Glyur001880s00033690.1 | PF13499.1 | EF-hand_7 | 77 | 137 | 6.70E-13 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 52.430 |
| SRR1783600 | control | 53.085 |
| SRR1783602 | moderate drought stress | 27.857 |
| SRR1811619 | moderate drought stress | 29.093 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 331.783 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 338.507 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 5.428 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 5.911 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 656.636 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 661.681 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 275.020 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 275.421 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 212.366 |
| SRR2868004 | Drought Stress (root) | 287.984 |
| SRR2967015 | Control (root) | 321.044 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1079.695 |
| SRR9715740 | Leaf | 954.041 |
| SRR9715741 | Leaf | 1150.616 |
| SRR9715739 | Root | 423.781 |
| SRR9715742 | Root | 433.536 |
| SRR9715743 | Root | 374.051 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 779.644 |
| SRR8749028 | MeJA induced 9h | 856.375 |
| SRR8749029 | MeJA induced 9h | 1247.774 |
| SRR8749030 | Uninduced | 500.743 |
| SRR8749031 | Uninduced | 741.259 |
| SRR8749032 | Uninduced | 833.836 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 167.197 |
| SRR8400027 | Control - Root | 192.225 |