Gene detail information of Glyur001876s00033000 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G35560.1 | 0 | Transducin/WD40 repeat-like superfamily protein |
| NR | XP_004509444.1 | 0 | PREDICTED: uncharacterized protein LOC101491617 isoform X2 [Cicer arietinum] |
| trEMBL | tr|I1MMW2|I1MMW2_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA16G22050.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01876 | 7661 | 15461 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001876s00033000.1 | PF08596.5 | Lgl_C | 667 | 789 | 7.80E-05 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 4.001 |
| SRR1783600 | control | 3.967 |
| SRR1783602 | moderate drought stress | 2.250 |
| SRR1811619 | moderate drought stress | 2.208 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 4.080 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.771 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.398 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.431 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 5.356 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 5.450 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.128 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.051 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 16.085 |
| SRR2868004 | Drought Stress (root) | 18.106 |
| SRR2967015 | Control (root) | 31.904 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.443 |
| SRR9715740 | Leaf | 2.495 |
| SRR9715741 | Leaf | 1.169 |
| SRR9715739 | Root | 0.229 |
| SRR9715742 | Root | 1.952 |
| SRR9715743 | Root | 1.588 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 8.316 |
| SRR8749028 | MeJA induced 9h | 31.156 |
| SRR8749029 | MeJA induced 9h | 10.810 |
| SRR8749030 | Uninduced | 15.364 |
| SRR8749031 | Uninduced | 7.665 |
| SRR8749032 | Uninduced | 5.165 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 7.411 |
| SRR8400027 | Control - Root | 6.712 |