Gene detail information of Glyur001872s00034944 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G22275.1 | 0 | Myosin heavy chain-related protein |
| NR | XP_004490374.1 | 0 | PREDICTED: LOW QUALITY PROTEIN: synaptonemal complex protein 1-like [Cicer arietinum] |
| Swissprot | tr|P61430|SYCP2_ARATH | 0 | Synaptonemal complex protein 2 |
| trEMBL | tr|K7LWZ4|K7LWZ4_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA13G01840.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01872 | 27736 | 38416 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.653 |
| SRR1783600 | control | 0.676 |
| SRR1783602 | moderate drought stress | 0.865 |
| SRR1811619 | moderate drought stress | 0.825 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.719 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.653 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 4.763 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 4.903 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.733 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.793 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.486 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.438 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.624 |
| SRR2868004 | Drought Stress (root) | 0.861 |
| SRR2967015 | Control (root) | 0.847 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.115 |
| SRR9715740 | Leaf | 0.223 |
| SRR9715741 | Leaf | 0.224 |
| SRR9715739 | Root | 0.046 |
| SRR9715742 | Root | 0.126 |
| SRR9715743 | Root | 0.042 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.732 |
| SRR8749028 | MeJA induced 9h | 3.272 |
| SRR8749029 | MeJA induced 9h | 1.724 |
| SRR8749030 | Uninduced | 1.129 |
| SRR8749031 | Uninduced | 0.808 |
| SRR8749032 | Uninduced | 0.788 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 1.264 |
| SRR8400027 | Control - Root | 1.774 |