Gene detail information of Glyur001868s00036729.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G07420.1 | 3.00E-101 | sterol 4-alpha-methyl-oxidase 2-1 |
| NR | XP_004489880.1 | 2.58E-152 | PREDICTED: methylsterol monooxygenase 2-2-like [Cicer arietinum] |
| COG | YP_004449996.1 | 1.00E-09 | fatty acid hydroxylase [Haliscomenobacter hydrossis DSM 1100] |
| Swissprot | tr|Q8VWZ8|SMO22_ARATH | 2.00E-138 | Methylsterol monooxygenase 2-2 |
| trEMBL | tr|G7K2U6|G7K2U6_MEDTR | 1.00E-152 | C-4 methylsterol oxidase {ECO:0000313|EMBL:AES96272.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01868 | 46677 | 49494 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| K14424 | SMO2 | EC:1.14.13.72 | Steroid biosynthesis | map00100 |
| Steroid biosynthesis | map00100 |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001868s00036729.1 | PF04116.8 | FA_hydroxylase | 113 | 208 | 6.30E-18 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.039 |
| SRR1811619 | moderate drought stress | 0.036 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.137 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.125 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.000 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 10.049 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 9.745 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 9.093 |
| SRR2868004 | Drought Stress (root) | 9.180 |
| SRR2967015 | Control (root) | 6.417 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 7.073 |
| SRR9715740 | Leaf | 15.248 |
| SRR9715741 | Leaf | 5.987 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 16.898 |
| SRR8749028 | MeJA induced 9h | 8.617 |
| SRR8749029 | MeJA induced 9h | 7.710 |
| SRR8749030 | Uninduced | 5.107 |
| SRR8749031 | Uninduced | 1.454 |
| SRR8749032 | Uninduced | 4.489 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 1.508 |
| SRR8400027 | Control - Root | 1.035 |