Gene detail

Gene detail information of Glyur001868s00036728.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G07420.1	1.00E-109	sterol 4-alpha-methyl-oxidase 2-1
NR	NP_001241155.1	9.86E-163	uncharacterized protein LOC100790183 [Glycine max]
COG	YP_004449996.1	2.00E-08	fatty acid hydroxylase [Haliscomenobacter hydrossis DSM 1100]
Swissprot	tr\|Q8VWZ8\|SMO22_ARATH	8.00E-138	Methylsterol monooxygenase 2-2
trEMBL	tr\|C6TM45\|C6TM45_SOYBN	4.00E-163	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA02G03540.1}

Sequence

Transcript Sequence

>Glyur001868s00036728.1
GGTGGTGCTGCCTTGGCTCTGCCTCTCCAATATATGCTCCTCCCTCTCTCTGCATCACACACACACACACACTCTCTCTCACACACACACACATTGGTGTCTCTGACTGAAATCTCTTCCTCTTATTCAATCGGCTATGGCGTCCATCATCGAATCTGGTTGGCAGTACTTGATCTCACATTTCAGTGACTTTCAACTGGCATGTTTGGGAAGTTTCTTTCTACATGAAGGCGTTTTCTTCTTATCTGGACTTCCTTTTATTTGGCTTGAGAGGGCAGGATGGATGAGCAAGTACAAAATTCAGGCGAAAAATAATAGCCNTGCAGCTCAGGAGAAATGTATTGTTCGCCTGTTGCTTTATCATTTTGGTGTCAATCTACCTGTTATGATTTTTTCATATCCCGTCTTCAAATACATGGGCATGCAGAGCAGTCTTCCCCTACCATCCTGGAAAATAGTTCTAACTCAAATAATCTTTTACTTCATTTTGGAGGACTTCATATTCTACTGGGGACATAGGATATTGCACACAAAATGGTTATACAAGCATGTNCACAGTGTACATCATGAGTATGCTACACCATTTGGACTTACCTCCGAATACGCTCATCCTGCTGAGATACTTTTCCTTGGATTTGCTACCATTTTTGGTCCCGCCATCACTGGGCCCCACTTGATAACACTCTGGTTATGGATGGTTCTGAGAGTCCTAGAGACAGTTGAGGCGCATAGCGGTTACCATTTTCCTTGGAGTCCCTCAAACTTCTTTCCATTATATGGGGGGATATTTGGAACTGATGTAGGGTACAGAAAGTTAAAAGCATTGAAGAACACAGGAATTGAAGACAATAGCGAGCAAAAGAAACAATTTGAATAAAAATTCTTGGGGAATATCCAGAATTAGAGAGCTAGCTGATTCCCAACTTTGAAGGGCATATTTGAAAAATGTCTTTCCTATCAACATGTTATGTGATTTTTGTGTTTTTGGTTGTAGCTGGTCTTGTNGACAAAGGGAGTGCTGATGGCTTTTTATGGACATTCCATGCTTGTTATTCAAAAAAACTTTTAGTGACAGTGGTTT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01868	32439	35937	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K14424	SMO2	EC:1.14.13.72	Steroid biosynthesis	map00100

Gene Ontology

biological_process

GO:0006633 fatty acid biosynthetic process

GO:0055114 oxidation-reduction process

molecular_function

GO:0005506 iron ion binding

GO:0016491 oxidoreductase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001868s00036728.1	PF04116.8	FA_hydroxylase	113	208	6.80E-18

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	18.459
SRR1783600	control	18.596
SRR1783602	moderate drought stress	8.635
SRR1811619	moderate drought stress	8.651

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	17.293
DRR006520	Root Summer glycyrrhizin high producing strain	16.835
DRR006521	Root Winter glycyrrhizin high producing strain	2.363
DRR006522	Root Winter glycyrrhizin high producing strain	2.273
DRR006523	Root Summer glycyrrhizin low producing strain	7.885
DRR006524	Root Summer glycyrrhizin low producing strain	8.140
DRR006525	Leaf Summer glycyrrhizin high producing strain	7.740
DRR006526	Leaf Summer glycyrrhizin high producing strain	7.556

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	34.485
SRR2868004	Drought Stress (root)	17.577
SRR2967015	Control (root)	14.339

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	5.907
SRR9715740	Leaf	4.038
SRR9715741	Leaf	2.549
SRR9715739	Root	2.985
SRR9715742	Root	3.828
SRR9715743	Root	3.846

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	5.859
SRR8749028	MeJA induced 9h	3.050
SRR8749029	MeJA induced 9h	4.424
SRR8749030	Uninduced	0.910
SRR8749031	Uninduced	0.300
SRR8749032	Uninduced	0.048

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	22.085
SRR8400027	Control - Root	26.317