Gene detail information of Glyur001867s00042504 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G40370.1 | 1.00E-20 | Glutaredoxin family protein |
| NR | XP_004491729.1 | 3.03E-42 | PREDICTED: glutaredoxin-C2-like [Cicer arietinum] |
| COG | YP_865319.1 | 4.00E-07 | glutaredoxin 3 [Magnetococcus marinus MC-1] |
| Swissprot | tr|Q9ZR41|GLRX_SOLLC | 7.00E-39 | Glutaredoxin |
| trEMBL | tr|I3ST16|I3ST16_LOTJA | 1.00E-41 | Uncharacterized protein {ECO:0000313|EMBL:AFK43408.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01867 | 31648 | 35510 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001867s00042504.1 | PF00462.19 | Glutaredoxin | 15 | 63 | 2.90E-13 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 77.969 |
| SRR1783600 | control | 77.972 |
| SRR1783602 | moderate drought stress | 67.068 |
| SRR1811619 | moderate drought stress | 65.904 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 121.693 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 119.217 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 129.584 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 126.825 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 73.375 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 75.099 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 62.820 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 59.853 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 140.528 |
| SRR2868004 | Drought Stress (root) | 180.196 |
| SRR2967015 | Control (root) | 130.359 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 193.728 |
| SRR9715740 | Leaf | 241.217 |
| SRR9715741 | Leaf | 205.470 |
| SRR9715739 | Root | 162.829 |
| SRR9715742 | Root | 174.159 |
| SRR9715743 | Root | 155.979 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 117.373 |
| SRR8749028 | MeJA induced 9h | 54.914 |
| SRR8749029 | MeJA induced 9h | 116.190 |
| SRR8749030 | Uninduced | 62.155 |
| SRR8749031 | Uninduced | 45.153 |
| SRR8749032 | Uninduced | 96.747 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 252.085 |
| SRR8400027 | Control - Root | 236.040 |