Gene detail information of Glyur001866s00038776 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G09670.1 | 2.00E-63 | Oxidoreductase family protein |
| NR | KEH26657.1 | 1.17E-126 | oxidoreductase family, NAD-binding rossmann fold protein [Medicago truncatula] |
| COG | YP_004267721.1 | 2.00E-45 | oxidoreductase [Planctomyces brasiliensis DSM 5305] |
| Swissprot | tr|Q9SZ83|Y4967_ARATH | 3.00E-88 | Uncharacterized oxidoreductase At4g09670 |
| trEMBL | tr|A0A072UAI0|A0A072UAI0_MEDTR | 4.00E-127 | Oxidoreductase family, NAD-binding rossmann fold protein {ECO:0000313|EMBL:KEH26657.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01866 | 15106 | 17828 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001866s00038776.1 | PF01408.17 | GFO_IDH_MocA | 7 | 127 | 1.20E-24 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.094 |
| SRR1783600 | control | 0.072 |
| SRR1783602 | moderate drought stress | 0.126 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.110 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.119 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.187 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.199 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 20.976 |
| SRR2868004 | Drought Stress (root) | 13.758 |
| SRR2967015 | Control (root) | 24.441 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.000 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.000 |
| SRR9715739 | Root | 0.175 |
| SRR9715742 | Root | 0.641 |
| SRR9715743 | Root | 0.482 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.673 |
| SRR8749028 | MeJA induced 9h | 0.755 |
| SRR8749029 | MeJA induced 9h | 0.511 |
| SRR8749030 | Uninduced | 0.019 |
| SRR8749031 | Uninduced | 0.249 |
| SRR8749032 | Uninduced | 0.647 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 2.092 |
| SRR8400027 | Control - Root | 2.221 |