Gene detail

Gene detail information of Glyur001865s00041457

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G64460.8	7.00E-111	Phosphoglycerate mutase family protein
NR	AFK36788.1	1.51E-176	unknown [Medicago truncatula]
COG	YP_007698482.1	2.00E-06	putative phosphoglycerate mutase family protein [Octadecabacter arcticus 238]
Swissprot	tr\|Q9FGF0\|PGML1_ARATH	8.00E-139	Phosphoglycerate mutase-like protein 1 {ECO:0000305}
trEMBL	tr\|I3S946\|I3S946_MEDTR	6.00E-177	Uncharacterized protein {ECO:0000313\|EMBL:AFK36788.1}

Sequence

Transcript Sequence

>Glyur001865s00041457.1
ATGGATACTGCAGCAGGTCAAGGTCTCTATCCATTGCACCATAGCAAAACTGTTCACCTGGTTAGGCATGCCCAAGGGGTTCATAATGTAGAAGGAGAGAAGAACCATGATGCATACTTATCTTACGATTTCTTTGATGCACACCTAACCCCTCTCGGCTGGAAGCAGGTTGATAATCTTCAAAAGCATGTGAAGGCATGTGAACTTCTCAAAAAAATTGAACTAGTTGTGGTTTCCCCNTTGTTAAGGACCATGCAAACAGCAGCTGGAGTCTTTGGTGGTGAAGCATACACTGATGGAATTAGTGAACCTCCTCTGATGATGCAAAATGTGGGACATAGTGACCGTCCCGCAGTTTCTAGTCTGAACTGCCCACCATTTATAGCAGTAGAGCTTTGCCGAGAGCAAATGGGACTTCATCCTTGTGATAAGAGAAGAACCATCAGCGAGTACCGACACATGTTTCCGGCAATTGATTTTTCACTGATTGAAAGTGACGAGGACATTTTGTGGACATCGGAAAGAGAGAAGAAAGAAGATGTTGTTGCTAGGGGACTGCAGTTTTTGGAATGGTTGTGGACACGTAAAGAGAAGGAGATAGCAGTTGTTACCCACAGTAGTTTTCTGTTTAATACTCTCAGTACTTTTGGAAATGATTGTCACCCAAATATGAAGAGTGAAATATGCAAACACTTTGCTAATTGTGAGCTACGTTCCGTGGTCATTGTTGATAGAGGTATGATTGGATCAAATAAGTCAACTACCAACTATCCTGGCAAGATTCCTAGTGGCCCTGATCTACCCAGTGATGCTACTGACTAGAAACATTCAAGGCGTATGGAATTTTCTTCAGTATAATGTAATGATTTCTTGATTGCATTTATACAGGCAAAGGTTCAATTTTTTTCTCCCCCGGAATAAATTATGTCCGTAAGAGCAATTTTAAAATTTCTTTTACGGGGTGAGTATGTAAATTGGTGACATATATAGGTGCCAATTTTTAAGATGAAAAAAGATGGATGCGAACAGTGACTACACAAAATTTTACATCCAAATTCATGAACAATAGACATTTTTCTTTTCACTTTATTGTATCACTTTTTTTTTTTGGTCCAAACTTTATTGTA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01865	15134	20852	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001865s00041457.1	PF00300.17	His_Phos_1	18	209	4.70E-21

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	16.445
SRR1783600	control	16.284
SRR1783602	moderate drought stress	12.597
SRR1811619	moderate drought stress	12.809

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	15.154
DRR006520	Root Summer glycyrrhizin high producing strain	14.950
DRR006521	Root Winter glycyrrhizin high producing strain	66.110
DRR006522	Root Winter glycyrrhizin high producing strain	64.156
DRR006523	Root Summer glycyrrhizin low producing strain	18.983
DRR006524	Root Summer glycyrrhizin low producing strain	19.119
DRR006525	Leaf Summer glycyrrhizin high producing strain	18.435
DRR006526	Leaf Summer glycyrrhizin high producing strain	18.166

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	38.885
SRR2868004	Drought Stress (root)	37.988
SRR2967015	Control (root)	33.290

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	34.757
SRR9715740	Leaf	23.337
SRR9715741	Leaf	49.788
SRR9715739	Root	4.855
SRR9715742	Root	15.281
SRR9715743	Root	13.661

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	6.465
SRR8749028	MeJA induced 9h	5.360
SRR8749029	MeJA induced 9h	9.112
SRR8749030	Uninduced	24.203
SRR8749031	Uninduced	22.990
SRR8749032	Uninduced	10.517

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	29.757
SRR8400027	Control - Root	37.668