Gene detail

Gene detail information of Glyur001864s00033366.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G38270.1	0	galacturonosyltransferase 3
NR	KHN27481.1	0	Putative galacturonosyltransferase 3 [Glycine soja]
COG	YP_007713204.1	5.00E-06	hypothetical protein MMALV_05390 [Candidatus Methanomethylophilus alvus Mx1201]
Swissprot	tr\|Q0WQD2\|GAUT3_ARATH	0	Probable galacturonosyltransferase 3
trEMBL	tr\|K7KNQ7\|K7KNQ7_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA05G09200.2}

Sequence

Transcript Sequence

>Glyur001864s00033366.1
AAAAATGTCGTCTGTTTTTTTTTTTGGGGGGTGGTGGGGGAACGTCGGAANGACATGAGAACAGAAATGGGAACGGAAGAAGACATGGATGCGGATCGGATTTGATCTGATCGCAGAATCCTAGACTGCCTTAGNGGTTGGTGATGAATAAGTAAGAGTGAAGATTCAATCATTCAATTCCAATTGGGATGGACACTTATCCCGGCATATCTCCACGCCGACTACTACTTGTTTTCTTCTTTTCGGTTTTGTTTTATGGTGCGGATTCTTCCGACGTCCCAACAACCACAGGATCTCGGGCCCTCTATGATGATTGTGACCAGTGTCATCGCACCAAGGAACGAGATATGTCTACAACTAGAGTCCGCAATTATCCTGATGAAAAGGACATTGATATAATTGCAACATATAGCGATGCATCTGGCCATGTTCGGCTAGCTAGGTTGAAAATGAGGGACTTATCTGATTCCTGGATTTGGGAAAACCCTACTAATGCAAACAGTGAATATCAAAAGAGCTCCCAGGGACAGATGGAATCATTGCAAACTGATTCAAGATTTGAAGACAATCCCAAGCACCCCACGGATGAACNTTATCCTGAAGAAAGCATAGTTAAAATTCCCCATTCCTCATCAATGACTCCNGTGAAGATCAAGCGCCGGATAATGCGGCTAGAAAGAAGAAAAGCNCGTGCTGCTGAACTCATTCAGCAAGACAAAGAAACTGACAATCGTATTGTATCAANGGCAATTGAACACTCTGAAGGATTTGATACCACTATCAAGGGAAAGTATAGTATATGGAGGAGAGAATATGAAAACCCAAATTCTGATTCAACTCTGAAACTCATGCGAGATCAAATAATAATGGCCAAAGCTTACACCAATATTGCAAAGTCTAAGAACAAAACTGTTCTTTACAAAGCTCTTGTCAAACACTCCAGAGATAGTCAACAAGCTATAGGAGATGCAAGTTCTGATGCCGAGCTTCACCTTGGAGCACTTGATCGAGCAAAAGCTATGGGTCATGTTCTTTCTATAGCAAAGGACCAACTTTATGACTGTGTTTTGGTGGCAAGGAAGTTAAGGGTGATGCTTCAGTCAACAGAAGATAGAGTGAATATACAGAAGAAAAGAAGCGCATTCTTGATTCAGCTAGCTGCGAAAACAGTGCCTAGACCGTTGCATTGCCTTCCCCTGCAACTCGCAGCAGATTATTACCTGCAGGGCTATCATAAGAAAGGAAATCCTGACAAAGAAAAGATTGAAGATCCATCTCTTTACCACTATGCTATCTTTTCTGATAATGTACTGGCTACATCTGTGGTTGTTAATTCTACTGTGCAGAATGCAAAGGAACCTGAGAAGCATGTATTCCATATAGTGACCGACAAATTAAATTTTGCAGCAATGAGAATGTGGTTTCTCATCAACCCTCCTTCTAAAGCAACCATTGAAGTTCAGAATGTTGATGATTTCAAGTGGCTGAACTCCTCATATTGTTCTGTTTTACGTCAACTTGAATCAGCAAGAATCAAGGAATATTACTTCAAAGCTAATCATCCTTCCTCCCTTTCTGTTGGTTCTGACAATCTAAAATANAGAAATCCCAAATATTTGTCAATGCTGAATCACTTAAGGTTCTACCTTCCTGAAGTTTATCCAAAATTGAACAGAATTCTATTCTTGGATGATGACATTGTAGTGCAGAAAGATTTGACATCTCTTTGGTCTATTGATTTGAAAGGAAGGGTGAATGGTGCAGTGGAGACATGCAAGGAGAGTTTCCATAGGTTTGATAAATACCTAAATTTTAGTAATCCACTGATCTCCAATAATTTCAGTCCCGATGCTTGTGGCTGGGCATTTGGCATGAATATCTTTGACTTGAAAGAGTGGAAGAAACGAAACATCACTGGAATCTATCATCGGTGGCAAGATATGAATGAGGATAGAACCCTCTGGAAGCTTGGAACCTTACCNCCAGGACTAATCACCTTTTATAATCTGACCTATCCGCTAGATCGAGGNTGGCATGTTTTAGGACTTGGCTATGACCCAGCTCTGAATCTAACTGAGATAGAAAACGCTGCTGTCATTCACTACAATGGAAACTACAAGCCATGGTTAAATCTTGCTGTTTCCAAGTATAAATCGTACTGGTCTAGATATGTTATGTTCGATAATCCATATCTTCGAATTTGCAACCTTAGCGAATAGTGAAATTTTGTGTCTTTATCTTTGCTCCTCCACTAGCATATTGTACCTTTTGAGGATGATAGCACATAGTTTTTTCTTGAAGAGAAACTCGAATGCAGTTTTGTTTCGTAACATTTTGATCANAAATGGCATTCCTTAAAATTGTGTAGAACGTCACGTGAAATCCTGAAGATTGTCANGGATTCCTAAGTATCAAGTTTGACAGATACAAACCGACACAAAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01864	18624	22198	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	GT8

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K13648	GAUT	EC:2.4.1.43	Amino sugar and nucleotide sugar metabolism	map00520

Gene Ontology

molecular_function

GO:0016757 transferase activity, transferring glycosyl groups

GO:0047262 polygalacturonate 4-alpha-galacturonosyltransferase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001864s00033366.1	PF01501.15	Glyco_transf_8	342	649	3.60E-71

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	31.714
SRR1783600	control	31.768
SRR1783602	moderate drought stress	32.745
SRR1811619	moderate drought stress	32.493

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	28.595
DRR006520	Root Summer glycyrrhizin high producing strain	28.233
DRR006521	Root Winter glycyrrhizin high producing strain	45.403
DRR006522	Root Winter glycyrrhizin high producing strain	44.325
DRR006523	Root Summer glycyrrhizin low producing strain	29.146
DRR006524	Root Summer glycyrrhizin low producing strain	29.303
DRR006525	Leaf Summer glycyrrhizin high producing strain	11.098
DRR006526	Leaf Summer glycyrrhizin high producing strain	11.194

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	34.296
SRR2868004	Drought Stress (root)	25.793
SRR2967015	Control (root)	30.619

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	13.295
SRR9715740	Leaf	16.361
SRR9715741	Leaf	15.285
SRR9715739	Root	1.622
SRR9715742	Root	9.402
SRR9715743	Root	7.279

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	32.000
SRR8749028	MeJA induced 9h	28.957
SRR8749029	MeJA induced 9h	19.831
SRR8749030	Uninduced	24.354
SRR8749031	Uninduced	23.371
SRR8749032	Uninduced	20.274

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	36.139
SRR8400027	Control - Root	33.625