Gene detail information of Glyur001862s00036504 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G18640.1 | 1.00E-101 | Leucine-rich repeat protein kinase family protein |
| NR | XP_003552837.1 | 0 | PREDICTED: probable LRR receptor-like serine/threonine-protein kinase MRH1-like [Glycine max] |
| COG | YP_004579826.1 | 5.00E-10 | hypothetical protein [Lacinutrix sp. 5H-3-7-4] |
| Swissprot | tr|C0LGQ4|MRH1_ARATH | 1.00E-152 | Probable LRR receptor-like serine/threonine-protein kinase MRH1 (Precursor) |
| trEMBL | tr|I1MZ04|I1MZ04_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA18G02850.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01862 | 43131 | 47833 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Protein Kinases Family | PPC:1.15.1 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| -- |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001862s00036504.1 | PF08263.7 | LRRNT_2 | 36 | 78 | 2.20E-13 |
| Glyur001862s00036504.1 | PF07714.12 | Pkinase_Tyr | 322 | 591 | 7.80E-26 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 19.081 |
| SRR1783600 | control | 18.955 |
| SRR1783602 | moderate drought stress | 18.208 |
| SRR1811619 | moderate drought stress | 18.187 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 35.313 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 34.914 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 26.735 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 26.018 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 51.528 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 51.701 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 12.799 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 12.714 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 26.800 |
| SRR2868004 | Drought Stress (root) | 39.285 |
| SRR2967015 | Control (root) | 30.944 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 59.937 |
| SRR9715740 | Leaf | 60.274 |
| SRR9715741 | Leaf | 69.820 |
| SRR9715739 | Root | 11.863 |
| SRR9715742 | Root | 39.005 |
| SRR9715743 | Root | 34.362 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 54.068 |
| SRR8749028 | MeJA induced 9h | 119.153 |
| SRR8749029 | MeJA induced 9h | 80.000 |
| SRR8749030 | Uninduced | 166.884 |
| SRR8749031 | Uninduced | 150.467 |
| SRR8749032 | Uninduced | 87.280 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 18.600 |
| SRR8400027 | Control - Root | 24.464 |