Gene detail

Gene detail information of Glyur001860s00042748

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G29380.1	1.00E-28	Carbohydrate-binding X8 domain superfamily protein
NR	KHN41343.1	3.55E-118	Glucan endo-1,3-beta-glucosidase 7 [Glycine soja]
Swissprot	tr\|Q9FJU9\|E1313_ARATH	3.00E-23	Glucan endo-1,3-beta-glucosidase 13 (Precursor)
trEMBL	tr\|K7LCN6\|K7LCN6_SOYBN	7.00E-114	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA09G11676.1}

Sequence

Transcript Sequence

>Glyur001860s00042748.1
ATCCAATGCCTCCTTTCTCAAGTTTTCTCATATTCTTCCTTCTCTCTCTGATCCAAGAAAGCTATGATTCTCTAGTTTTTATTATATATACAAAAGATGCANGTTAAAAAGATAAAATTCTCCTTCAGAGTAACAAATCCTTGCTTCTCAGACATTAATTGATCATAACCATCTAGAAAGGAAAAATCATCAGAAGCCAAGCATTGAAGCCAACAACCTGCAGATATGGGAGCCAGAAGTTGGAGCCTTGTGTTATTCTCGTTGTGCCTTTTCTTCAGTTCAGGTGGTCTAGGTGCAGCCATAACATTAAGAGAAGATGAAAATCAGGAATTCCCATCATATGAACCCAGTAACCAATTGGATGCAGTTCCAGTTGTCAACCCTACAACTCCAGGCACAGCAAATCCTTATCCTACAATAAACCCAACATCTCCTCAAGCACCTGCAGGGACAACAGGGCAAACCCCCCCAACAGCCCCCACAACTCCAAACACATACCCTAAAACCCCCACAAACCCATACATGACAAACCCAACAACCCCCACAAATCCATACACAAACCCAACAACACCTACCACAACTCCAACCAGCCCAACCACAACCACTCCTCCTCCTACTACTACTACTACTACTACTCCTCCTGCATCATCATCAGCATCAGGTGGTCAATGGTGTGTTGCAAGCCAATCAGCTGCAGAGAACACTCTGAAGGTAGCTCTTGACTATGCTTGTGGGTATGGTGCAGACTGTTCAGCAATTCAACCAGGGGCAAGTTGTTATAACCCAAACACTCTGAGAGACCATGCTTCTTATGCATTCAATGACTACTATCAAAAGAATCCAGCACCTACAAGCTGTGCATTCGGAGGAGCAGCAACACTTGCAAACAAAGATCCAAGTCAGGGTAATTGCCACTATTCATCATCCAAAACACCAAGCATGGGTCCACCAACATATGTAAGCCCACCAACTCCACCAAGTACTATGATGACCCCAACTCCACCAAGTACTATGATGACCCCAATGACACCAAGTACTATGACACCAACTGCACCAAGCACCACATTTCCTGGTGGGGCATCAGTCTTTGGTGCACCACCAATAGGAAGCCCNAATATAGCCACATCTGCTTCTTATTCTGCACTGTTGCTATTTACCTGTCTTTGGGCTTCACTTCATGTGGAAAATAACATCTAGAAGAAAAGGAAGGGTTGGTCATTACTTATGTGATATGGTGGAACTCACCCAGTCTTCCAGCAGCTTCTGCAAGATTTCAAGGAAGAAGAGTCAAAATGCCATATTTGTCAGCTGAATTCTTGCTGCTAAAAGTACTACTACCTTACATCAATGTCCCTCTTAGTGTTAGCAGATTTATAGGTTATTGTAGACAGTTTTTTCAATTATTAGCTGTGCACAATAAAATATTAGATTATTATCTACTTCTATTTGAAACTTATCTTCCATAGATGACCCCTGAATCAGGAGGCTACTTCTGATTAATCTACTTTATCCACAATAGTTGTATATATTATATAAAAACATGTGATATGGCCATGTCACTATGTACCATGGCTTGAGTTGCAATAATATT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01860	5690	9763	+

Gene family

Gene family	subfamily
Carbohydrate-Active enzymes Family	CBM43

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001860s00042748.1	PF07983.8	X8	148	218	8.10E-17

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.798
SRR1783600	control	3.690
SRR1783602	moderate drought stress	3.124
SRR1811619	moderate drought stress	3.097

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	11.097
DRR006520	Root Summer glycyrrhizin high producing strain	10.530
DRR006521	Root Winter glycyrrhizin high producing strain	0.393
DRR006522	Root Winter glycyrrhizin high producing strain	0.319
DRR006523	Root Summer glycyrrhizin low producing strain	14.379
DRR006524	Root Summer glycyrrhizin low producing strain	13.392
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.774
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.888

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	7.128
SRR2868004	Drought Stress (root)	6.081
SRR2967015	Control (root)	5.502

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.396
SRR9715740	Leaf	0.186
SRR9715741	Leaf	0.635
SRR9715739	Root	0.467
SRR9715742	Root	4.204
SRR9715743	Root	2.593

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.332
SRR8749028	MeJA induced 9h	0.167
SRR8749029	MeJA induced 9h	0.283
SRR8749030	Uninduced	0.167
SRR8749031	Uninduced	0.202
SRR8749032	Uninduced	0.067

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	3.032
SRR8400027	Control - Root	2.502