Gene detail information of Glyur001859s00035808 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G38260.1 | 3.00E-80 | Protein of unknown function (DUF833) |
| NR | AFK33378.1 | 2.51E-165 | unknown [Lotus japonicus] |
| COG | YP_005028849.1 | 6.00E-42 | hypothetical protein Dsui_2658 [Dechlorosoma suillum PS] |
| trEMBL | tr|I3SVY2|I3SVY2_LOTJA | 9.00E-166 | Uncharacterized protein {ECO:0000313|EMBL:AFK44424.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01859 | 12932 | 17523 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001859s00035808.1 | PF05742.7 | NRDE | 1 | 250 | 4.50E-57 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.267 |
| SRR1783600 | control | 0.310 |
| SRR1783602 | moderate drought stress | 0.032 |
| SRR1811619 | moderate drought stress | 0.032 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.185 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.183 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 45.927 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 44.818 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.654 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.638 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.455 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.438 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 5.296 |
| SRR2868004 | Drought Stress (root) | 6.589 |
| SRR2967015 | Control (root) | 6.319 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.702 |
| SRR9715740 | Leaf | 0.608 |
| SRR9715741 | Leaf | 1.804 |
| SRR9715739 | Root | 0.127 |
| SRR9715742 | Root | 0.262 |
| SRR9715743 | Root | 0.051 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 103.782 |
| SRR8749028 | MeJA induced 9h | 595.334 |
| SRR8749029 | MeJA induced 9h | 591.847 |
| SRR8749030 | Uninduced | 34.455 |
| SRR8749031 | Uninduced | 709.302 |
| SRR8749032 | Uninduced | 617.959 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 5.486 |
| SRR8400027 | Control - Root | 1.873 |