Gene detail

Gene detail information of Glyur001855s00032358.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G77280.1	8.00E-91	Protein kinase protein with adenine nucleotide alpha hydrolases-like domain
NR	XP_010269084.1	0	PREDICTED: probable receptor-like serine/threonine-protein kinase At5g57670 [Nelumbo nucifera]
COG	YP_003300616.1	4.00E-10	serine/threonine protein kinase with PASTA sensor(s) [Thermomonospora curvata DSM 43183]
Swissprot	tr\|Q8RXC8\|RBK2_ARATH	5.00E-37	Receptor-like cytosolic serine/threonine-protein kinase RBK2
trEMBL	tr\|A0A0A0KIT6\|A0A0A0KIT6_CUCSA	0	Uncharacterized protein {ECO:0000313\|EMBL:KGN47686.1}

Sequence

Transcript Sequence

>Glyur001855s00032358.1
CACGAACCCATCCATCATCATTATTAGAGANCGAAGAAGAAGAAAGAATCACAAGCACAATCATCATCAATAGTTGTGGTTGGTTACTTGGTTATACAGTTGCAGCAAGCACTCACAAAAAAAAAAAACAAAGTCCAAACCAAACAAACCAACAACAACAACAACAACAACAACAACGTTTTAAAGTTAAAACCGAACTATGTTTTTTTTTATTCCAATTTCCAAGGCCTTAAACTAACTCGAATAGCTGGTTGATGCTAATGCGATACGAGCCTAGAACGAACCTGCGAATTGTGCAATAATCACCGACAACAAAAGGACAAACGGATTCTGATAGATAGCGACGACACCGACACACTACAACGTGGTTGAAAATGGTGCAAACGGACACCGTCGGTGGCGGAGGCTCCGGTGGCCGGACGGTGGTGGTGGGTGTGAATATGGATTCTCATAGCAGAGAATTGCTCACGTGGGCATTGGTCAAAGTCGCTCAGCCTGGTGATGTTGTCGTTGCTCTTCATGTTCTTGCCAATGATGAAATTGTGAATCGAGATGGGAAATCGTCTCTGTTTTCTCTTGTCAAAGCATTTGACTCTGTTCTTGCTGTCTATGATGGATTCTGCAATTTGAAACAGGTGGATCTGAAGCTAAAAATTTGTCGGGGATCATCAGTGAGGAGAATTCTGGTTCGAGAAGCAAATGCGTATTCTGCAACTCATGTTATAGTCGGAACTCCTCAAGGTCTTCACAAAATTCGGCCATCTATTTCTGTAGCTAGGTACTGTGCTAAGAAGCTATCAAAGGATTGTTGGGTTCTTGCTGTTAACAATGGGAAAATTGTGTTCAAGAGAGATGGCTCACCAGCAACTCGTGCTGACTTCAAAAAAGGAAATGGGTTGCTTGGTTCGATTCACTGGACACTTAACAAGAGTTCAAAAGTACTAAATGATGACAGTGTAGGGATTCATGAAAAGGGTAGTGGCACTACCCAGATTTCAGATCACAGCTTAGCTAAGGTTTTTATGGAGTCTACAGAAGTTGGTGAGAAGAAGAGTTGCTCCATTTGTGATTCTTCAACCCCAGCATTGCCAGATTCATCTGTGGAAGAGTCTTCTGGTGATGGTAATGGTGAGAACTCTTTGGCTATAGTGCCTGTAAAGGCCACCACTGGTGCTGATAGAGAAGTAGTTGAACTGAAACCTGGTTGGCCACTACTGCATAGGAAGATTTTATCAGACAGGAAAATCTCTGTGGTTCAGTGGGCAATGCGGTTGCCATCTAGGAATCTTTCATATGCTGCAGATCATGACCATAAAACGAATGATTGCGACCGTGGTGAAGATCGATTCTTGGGTCTAGATGGCAAAAGTGGTGCTCTTGTTCCGGTGGATGCTGAAATTGGGACTGCTGCTTCGCCTGAATGCAATTTGAGAAGCATGCCTAAGGAATTGGAGGGACTTCATGAGAAATACTCCTCCACTTGCAGATTGTTCAATTACCAAGAGCTTCTATCAGCAACATCAAATTTCTTGCCTGGTGTGTACTTTCTCTTTGGAACTCATAGTCAGGTTTATAGAGGATGCCTTCCTGATGGCAAGGAACTTGCTGTTAAGATCTTAAAGCCTTCTGATGATGTTTTGAAGGAGTATAAGGTGGCAATGGGTGTTGCTGAGGCTTTGGATCCTCATGTTGGTTCTATTGATTTTCTACAGCTCTCTGACTTTGGACTTGCTAAATGGGCATCAACCTCGTCATCACATATAACCTGCACAGATGTTGCAGGAACCTTTGGTTACTTGGCTCCTGAATACTTCATGTATGGTAAAGTAAATGATAAGATTGATGTCTATGCATTTGGTGTTGTGCTTCTTGAGCTTCTTTCAGGGAGAAAGCCCATAAGTGGTGATTATCCCAAAGGTCAAGAGAGCCTTGTCATGTGGGCAAGTCCAATTCTAAATAGTGGGAAGGTGTCAAAATTGTTGGATCCTAGTTTGGGTGATAACTATGATCATGAAGAAATGGAAAGGATGGTATTAGCAGCCACACTTTGTATCAGACGTTCTCCAAGAGCTAGGCCTCAAATGAGCCTTATCTCAAAGCTCCTCAAAGGTGATGCTGATGTAATCAAGTGGGCAAGGCTAGAAGTCAATGCTTTGAAATCACCAGAAATGGTTGATGAATTAGAAGCCTGTCCACCTTCTAACCTACAGTCACATCTTAACCTTGCACTGCTTGATGTGGAGGATGACTCACTCTCCCTATGCAGTGTTGTTGACCAGAATGTCTCATTGGAGGACTACTTGAGAGGCAGGTGGAGCCGCTCCTCAAGCTTTGATTGAGCAAAACAAACTCCTAGCATATTGCTAGAAGCATGCAAGCTTAATTTCTTTTAATCTTGATCTTTTGTACATAGTTTATTTTTCCTTTTGTNGTTGCATGTTCCATTGTCATAATCAGGCATCTTCTATATGGAACTTTATAAATGGGGGTTAGGANGAGAGGTTGTTTGTGTGTGCCCTCCTCCTTCCCTTTGTTGGGAAACTACGCCTTGTAATTTGTAGGGCGAGTTACCCTTTGTCGGTGGNTCTCAATTGGATCGAGTTGTAATATGTTGTAGTGGCAAAAATAAAGGACGAATAAGTTGTATCTTCCCTCCTGAATCAAAATAAAACTCAAATAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01855	36449	40528	-

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.10.1

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006468 protein phosphorylation

GO:0006950 response to stress

molecular_function

GO:0004672 protein kinase activity

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001855s00032358.1	PF00582.21	Usp	15	147	5.80E-06
Glyur001855s00032358.1	PF00069.20	Pkinase	445	521	3.50E-13

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.943
SRR1783600	control	1.851
SRR1783602	moderate drought stress	1.790
SRR1811619	moderate drought stress	1.748

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.004
DRR006520	Root Summer glycyrrhizin high producing strain	3.046
DRR006521	Root Winter glycyrrhizin high producing strain	2.681
DRR006522	Root Winter glycyrrhizin high producing strain	2.311
DRR006523	Root Summer glycyrrhizin low producing strain	2.943
DRR006524	Root Summer glycyrrhizin low producing strain	2.973
DRR006525	Leaf Summer glycyrrhizin high producing strain	11.706
DRR006526	Leaf Summer glycyrrhizin high producing strain	11.281

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	12.720
SRR2868004	Drought Stress (root)	13.842
SRR2967015	Control (root)	11.431

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	5.059
SRR9715740	Leaf	4.352
SRR9715741	Leaf	3.450
SRR9715739	Root	0.769
SRR9715742	Root	1.305
SRR9715743	Root	1.626

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.400
SRR8749028	MeJA induced 9h	1.630
SRR8749029	MeJA induced 9h	0.685
SRR8749030	Uninduced	2.026
SRR8749031	Uninduced	3.130
SRR8749032	Uninduced	3.713

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	4.773
SRR8400027	Control - Root	3.721