Gene detail

Gene detail information of Glyur001855s00032357.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G21580.1	8.00E-167	Zinc finger C-x8-C-x5-C-x3-H type family protein
NR	KEH40506.1	0	zinc finger CCCH domain protein, putative [Medicago truncatula]
Swissprot	tr\|Q3ED78\|C3H7_ARATH	4.00E-174	Zinc finger CCCH domain-containing protein 7
trEMBL	tr\|A0A072VFY2\|A0A072VFY2_MEDTR	0	Zinc finger CCCH domain protein, putative {ECO:0000313\|EMBL:KEH40506.1}

Sequence

Transcript Sequence

>Glyur001855s00032357.1
CGTNAAGGAGGATTGGATTAACTCACAAGCAAGCACACTATTCCTTGCATGTGATGTGAGACCAGTGAGTTGCCCCAAACCCACGCAGCAGTCAAACCAATAATTAAGCAATTAAATAAACAACAACAAAAAAAAAGAAGAAGATAGGTTTTATCTTCAATTCGCACCTCTCAGATGCGTTCAACGCAACTACAGGACCCAAACGCCGTCGTTGACGCAAGCAGGATCCAATCCAATCGCCGCCGCCACCGTCAATTCTACCATCAACCGTCATGGATCAACACTTCCCCCACCACCACCATCACCACCACCACCAACAGCAACAACCCCAACAACACCGCACAAGGTACGCTCCTGTAGCCCCTCAACAATCTCATCATCACAACCCTCACAACCTCCCTCCGCCTCCCCCTCTGCCGCAACCTCCTCCTCCTCCTCCTCTCTCCTACCGCACCATCCACACCCCTCCTCCTCAACCCTACAACCCTCCCCCTCCTCACCAATCCTCACAATTCCCATTTTACCCCCACCGACCTATCGAAGAAGAACGCCCTCTATCAACCACAAACCACCACCACCACTCCTCCTTCTCAAACCGCACTCTCCCCGACGACCACCACCCCCGACGAATTGACCGAATTGACCGCNGCAACCCCGAACCCCTTTGGAACCCTAGCACCGATGACCGCCCAACAAGGAATTACCCTCCCCTCGATTTCGACCGCGAATTGCATCACCACCACCACCGTCCTCCTCCTCCCCCGCCGCCTCCGCTGTCNTATCCGCCACTCCGGTACGACGCCGAGGGCGGTTGCGCGAGGGAACGCCACGAAGGAAACACCAGGGAAGACTTCGTCTGGGGNAGGGGCAACAGTGACGGCAGTTACCACCGCCGCGTACCCGCCGACGCTGCACCGAATCAAGCAGCGATGTCGCGGGACTCCGCCACCGCCANCGACTCGAAATCTGGCGGCTACGGTCGCGTCTATGACGTGGAATGCGATGCTGACGTGTCCACCAGGGCTGGCAGGGTCGACACCAGAAGGTGGGTGAATGATAGAAAAGGACTCAGAGAGTTACATGATTCTTNTAATTCTTTTGAATTGGTGAATAACGAGATTGGTGGTGTTCCAGTGAAAAGAGAGTATTACGGTTCTGAAATTGTTAGGTATAATAGTAATAACTGCAGAGGGAACAACAGCAGAGAGTATGGTCACGAATTCACTCGCACTCCGCCGAAGAAACAGATACAGAAGAAGAGTGCACTGCTCAGACTCCAGACGGTGAAACCGAATCATAGGAGCCGAGATGTCGAACAGTTACGTTATGCTGGCTATGTTCCTGAGTCTAACAACAATAATTTCTTCAGGGGTAACAAGGAGCAACATGGGTATTTTTCAGGTCATGGGATGAAGGCAGAAGAGAAAGAAGAAAGCTCGGTCGAGCTTGATATTTCTTTTGAATCAAATTCTCTGGTGGCTAAGGCTATTGTGCCGGCACCTTCAAGTTCGGGTGCTCCTGTTTCTGACTCGAATACGACTTCTGTTTCTGATGCAAATTTGGAAAAGAGTAAAAAGGTTTCGGTCTCAGACGGTGATTGTGCTGGTTCGCAACCGGCTAAACTGTCTTCTGGTGGTGGAAGTTTAAACAACTCGCCGTGCAAAGCAAATGATAATACCTCGCAGAAGAATGAAGGTGATACTTGTTCTCAGCCTTGCACCACCAGCAATCCTCATGAGAAAAATAAGGTGGCAGTTTCTGGTAAAGTTAGTGATAGTTGTTCTGGCAAATCGTCTGCTAGGGTTGTCAAGAAGAAGAAAATTGTGAAGAGAGTGGTGAAGAAAGCTGTTGTAAACCCTAAATCAACTGTGTCAAGGTTGCCATCTGCGAATGCGGTTGGTGGAACTGTGCAAGCAGATAGTGTCACACTTAGTTCATCCACTGCCTCTGGTCCTGTCAAAACTGAAACTTGTTTGGAGGAGAAAAACACTGCTGTTGACAAGGTGTCTGTGCCAGACTGTTCGCACTCTTTGCCGAAGGAAGGGAATGTNTTGACTGACGATAACAAGGGAGATTCATCCCTGCTTAGTTTGGGGCCAGATTGCAGGTCACAAGAATGTAAGGCTGATGAGGATTCTAATTTTGGGAAAGTGTCCAGGTTTGAAAGAGGTGGAAGCATTTCAAATTCTCCATCTCGTGCTTCTAGTAGTGAAGTTAAAAATAGTGGTTNTGATTGTTTAGATGCTAATAATTCTGTCCATGACTTGCTTAGCATGCCAAATATTGACAAGGTTACTAAATCATTAAATGGAAGTACATCATCTGAAATCAGTCACATGGATTATGGGAATGAGCAATTAATTCAGAATGAAGTGTCTCTANCACCTGGGAAGTGTTCAAATGTAGGATGCCCAGAGAATAGGAATCTTGTAGANGTAGGGGATGAAATGAATTGCAAATTGTCTAGTTCGGCTGACAGTGTCATTTCCACAGATATTATAGATACACATAATTCTGCCAATGACANGGTTTATAGCTTCAATTCCAATTATCTTACAGGTTCAGAAGAGAAATTTACTGTTACTGACAGTGGGAATAATGACATTGTTGGTAAGGCTTATTGTGACAATATAGCCCCTTCAATCACTCAGTATGCTATTTTGGAAGAAAATTCAGATACAGTCATCCCTATGCCAAGCAGAAGCAGTGGAACGGTTGCCTTTTCATGTTCAGGAAACACTAGGATTCAGGATGGTCTAGATTGCCTACCANGTGCCGGTGTACTGAAGCAGGGTTCTGATAATGGATCGTCTCCTTTAGAAGATAGNATCACTGTTCAACATTTTGGCATCATGAAAGATTCTGAAAAGCAGGTATCCCTTGGNGAAGTTGCCATATCCTCTGATAATTGTGACACAGAAAAAACATTCCCGATTTCTAATATTTCAGTTGGATCTGATGAAAGGGATACAAATATGGCCCCTACATTCACTCATGATGCTATTTTGCAAGAAAATTCAGATGCAGCCATCCCTCATCCAAGCAGTGGANTGATTGCCCTTTCAAGTTCAGTAAANACTAGGATTCAGGATGGTCTAGATTGCCTACAACATGCCGGTGTACTGAAGCAGGGTTCTGACAATGGATCATCCACTTTAGAAGATAGTATCACTGTTCAACATTTTGGCATCATGAATAATTCTGGAAAGCAGGTATNCCCCAGTGAAGTTGCTATATCCTCTGATAATTGTCAAAGGGATACAAATAAGAATAGAAAGAGAAAAGTTAGGACTCATTTGAATTTTGTGAGNTCAAATAGGGATGACATATCTCCAGACCGTGTTAATCTAGTTAGCCATGCAAATGATGCTGATAGAGGCTCAAATCTGTTATTGAAGGATCCATGTCCTTCAGAAGTTTTAGATCATTCTGTTCAAAGCTTAGATTTTGACTTACAATCCAACCTGGATGGGGTCACTGCTTTACATGGGAAAAGGGGTATTTTAGAGGCTGAATTTTGTGTTGGAAATAATGACAATGATGATGCAAATAAGGTTTCACCAGTTTCTAAACGGAAAAAAGTCACTGCCAGTCTCCCAAATTTTACTCAGTGTCAATCTGAATTTAGTGATGCGATTGTGGCTACCACATCTAATTCAGAATTTCCTATCAGTTTTAGTGATNACCGAGCACATCAGAAAGAAGTTGCATTGTCAAACGTTGGTATTCTGTCTATTGCTCGGTCGATGCCTTATTCAGATGATATTGCTAAATCGTCTGACAGTATTNTGGCTGGAGGATCATTTGGGTCTATCGATGCAAATAGGGAAGCCATGAGTTCTGAGCATTTGGAATTGCAGCACTCAGATATGGTCTCTTATTCACCGTCAGCCTTTCCAAATGTTCAGTTCTCAGTGTTTGGATGTGAGCCGAAAGAGAATATTACTCCAATTGTGCCTATAAGTAATAGTAATACTCAAACTGACATTTTGGTTACTAGAAATATCGAAGGAGAAAAGACAGATTCACAGGCTGTTGAAATAGATTACCATTATAGTGACATTGTGCATAGGTCTCCAAGGGCTGATATGGAATCTAATGATCTCAATATGAAGGATGATTTACTTGCCCAGCAGAACCTTATGTCCTGCCCAGCCAATGGTGATGGAGTCACTACCAGTGATTCAAATGATGAATTGATTCAGGATTCACCTGATGCTTTATCAGATATGTGTTCTCGAGGGATGGTGTCTGAGGTACCAGATAGAAGTATTATAGAATTGACCGCAATCCATGATGAAAACTTTTGTGGGGATGAAGAAAATCCNAATGACATATCTATGGTCAAACATGGTTCTGACTCACATACTTTTACTCCATCAATGCAGCATACTGAAAAAATTATGAAGTCAGATCATGCAATTGGACATAGAGACCCGATAAAGAGGAATATAATGCCAGAACCAACCCAAGTTTATCCCAAAGTTACAACACAGGGTCTAAATTCATATTGTTCTGGATTAGATGGGAGCAAAAATCAGCCAGGTGGTGTCATTCTTAAAACTTTCCAGGGTCATTCTTTCGCCTTTTCGAAGTCAAAGACAAAGACATCTTCCTCTTCAATCCATAATTCAACATCTAGAACTTGGCATCGTGCAGGTAATAATAATCCTCCCACTTCTCTACCTAGAATCAAGCCTTCAGCAGGAACATTTCCTCCCAAAAGGCCAACTCTGGAGAGGAAAGGGAACTTTCAAAATACTTCTTACATTCGTAAAGGTAACAGTCTTGTGAGGAAACCTACTCCAGCCTCCGCTATACCTCAAGTCTCCTCAGCAAATCGGCCACCTTTGGGCTTAGATGAAATACCAAAGAACACCAGATCAGAAGGCAGGGCCGATGTGACCGATCAGTCAATTTACTTGAAAACAGCAGTATCAAGTGCTCCTCTGAAGAGGCAGAAAACACCTCCACTGCCCATTGATACAAAATCAGAGGAAAAAATATCTTCCCCATTGGTAGAACCTCCTTCCAGTGGTTGCTGTGAAAATACATCAGATCNTAGGAAATTTATAGAAACTAATGATGCACCAGACTCTTCTGAAGATGTGCTGAAGCAATATGAAACTCCTGAAAATCAAACTGGTCCATCTAACAATGGGGAGAGCCAATTTGAAGCAAATGATGGGAATATTTCTTCTTTGAACTCAAAGAAAATAGTTTATATAAAGCCCAAAACAAATNAATTGGTTGCGACTTCAAATGCTTGTGATGTTATCATCTCTACTGATGACAAGGGCCAAACAGCCTTCTCTGATAGCTACTACAAGAGGAGAAAAAANCAATTGGTTAGGACAACATTTGAAAGTCATATCAACCAGACAGTTGCAATGCCCAATAGCACTGTAAATTCTGATGGGCAAAGGGCTAGTAAAGTACTTAGCAACAGGAGGTTTACTAAGAGGCGATCACATAAGGTTGCTGGGATTTCATGCAAATCTTCAAGAGCCTCCTTAGTGTGGACACTTCGTAGCAAAAATTCATCGGAAAATGACAGGGGCTCATCGCATTATCAAAAGGTTTTACCTCACTTGTTTCCATGGAAAAGAACAACGTATTTAAGAAGCTTCATTCATAATTCTGCTTCAAGCTTCAATAGTAGTTCCTTATCTGCAATCGGCAAAAAATTGCTTCTGTTGAGAAAGAGGGATACTGTCTACACTAGGTCAACCCATGGGTTTTCTCTTTGGAAATCCAAGGTATTAGGTGTTGGTGGGTCTAGTTTGAAATGGTCAAAATCCATTGAGAAGCACTCAAAGAAAGCTAATGAGGAAGCCACACTTGCTGTTGCTGCAGTTGAGAAGAAGAAGAGAGAGCATAAAGATGTGGCTTGCATTGGTTCTCAGGCAAAGAGAGAACGTATATTTCGTATTGGTTCAGTTCGCTATAGAATGGATCCTTCCAGGCGGACACTTCAGAGGATTTCAGACGATGAATCCCAGTCCTCCTCCATCTGTTCGGGTTTGGCTGCCAAAAGAGCATACATTCCAAGGAGATTAATGATTGGAAATGATGAATATGTCCGAATAGGCAATGGTAACCAACTTATCAGAGACCCAAAGAAACGAACTCGAAAATTGGCAAATGAAAAAGTTAGATGGAGCTTGCACACGGCCAGACAGCGGTTGGCTCGAAAGCAGAAGTATTGTCAGTTTTTCACAAGATTTGGGAAATGCAACAAGGATGGAGGGAAGTGTCCTTATATTCACGATCCCTCAAAAATTGCNGTCTGTACTAAGTTCCTGAATGGTTTATGTTCTACTCCCAACTGCAAATTGACTCACAAGGTTATTCCAGAGAGAATGCCAGATTGTTCATATTTTTTACAAGGCTTATGCTCAAACGGAACTTGTCCATATAGACATGTCAATGTGAACCCTAAGGCATCTATTTGTGAAGGATTTCTTAAGGGTTATTGTGCTGATGGGAATGAGTGTCGGAAGAAGCACAGCTATGTCTGTCCTACTTTTGAAGCAACAGGAACCTGTGCTCAAGGAACCAAATGCAAGCTTCACCACCCCAAAAAACAAAGCAAGGGAAAGAAGAGGAAAAGATCTGGAGATCAGAACAACTGTAGNGGGCGTTACTTTGGTTCTATTCCCGTTGATGTTTCTGAACCTGGGACAATGCTGCCTCCAAGGGAACACCAACAACAGAACGATGAACTTGAAAAAGAACTTTCTGACTACATCAGTCTTGATGTGATTGAAGAAGAAGCTGCAGACACTGTTGATCAATCATTTGAGCCATCAACATTTTGTGACAATAATTCCTTGGATTTACAGTTGGATACTTGTGATGAGCTTATTAAACCGTTTCTTTTAATATCAAAATTCACATCACAATCATCTCAGTCCAGTAGCCTGCAAGCTTAGGCAAGTGGCAGAGAATGNAGGCAATTGTAAATGAGGTAATCTAGGTAGTACAGAGTTTTTTTTCCTTTTTTTTTTTTTGAAATTTTCTGCCTCATTGATTTTGAATTCCTATTATCATTGTATACACTACACAGGTCATATTTCCCCCCTCCCCTTGAATTTTATGTATA

Protein Sequence

>Glyur001855s00032357.1
MDQHFPHHHHHHHHQQQQPQQHRTRYAPVAPQQSHHHNPHNLPPPPPLPQPPPPPPLSYRTIHTPPPQPYNPPPPHQSSQFPFYPHRPIEEERPLSTTNHHHHSSFSNRTLPDDHHPRRIDRIDRXNPEPLWNPSTDDRPTRNYPPLDFDRELHHHHHRPPPPPPPPLSYPPLRYDAEGGCARERHEGNTREDFVWGRGNSDGSYHRRVPADAAPNQAAMSRDSATAXDSKSGGYGRVYDVECDADVSTRAGRVDTRRWVNDRKGLRELHDSXNSFELVNNEIGGVPVKREYYGSEIVRYNSNNCRGNNSREYGHEFTRTPPKKQIQKKSALLRLQTVKPNHRSRDVEQLRYAGYVPESNNNNFFRGNKEQHGYFSGHGMKAEEKEESSVELDISFESNSLVAKAIVPAPSSSGAPVSDSNTTSVSDANLEKSKKVSVSDGDCAGSQPAKLSSGGGSLNNSPCKANDNTSQKNEGDTCSQPCTTSNPHEKNKVAVSGKVSDSCSGKSSARVVKKKKIVKRVVKKAVVNPKSTVSRLPSANAVGGTVQADSVTLSSSTASGPVKTETCLEEKNTAVDKVSVPDCSHSLPKEGNVLTDDNKGDSSLLSLGPDCRSQECKADEDSNFGKVSRFERGGSISNSPSRASSSEVKNSGXDCLDANNSVHDLLSMPNIDKVTKSLNGSTSSEISHMDYGNEQLIQNEVSLXPGKCSNVGCPENRNLVXVGDEMNCKLSSSADSVISTDIIDTHNSANDXVYSFNSNYLTGSEEKFTVTDSGNNDIVGKAYCDNIAPSITQYAILEENSDTVIPMPSRSSGTVAFSCSGNTRIQDGLDCLPXAGVLKQGSDNGSSPLEDXITVQHFGIMKDSEKQVSLGEVAISSDNCDTEKTFPISNISVGSDERDTNMAPTFTHDAILQENSDAAIPHPSSGXIALSSSVXTRIQDGLDCLQHAGVLKQGSDNGSSTLEDSITVQHFGIMNNSGKQVXPSEVAISSDNCQRDTNKNRKRKVRTHLNFVXSNRDDISPDRVNLVSHANDADRGSNLLLKDPCPSEVLDHSVQSLDFDLQSNLDGVTALHGKRGILEAEFCVGNNDNDDANKVSPVSKRKKVTASLPNFTQCQSEFSDAIVATTSNSEFPISFSDXRAHQKEVALSNVGILSIARSMPYSDDIAKSSDSIXAGGSFGSIDANREAMSSEHLELQHSDMVSYSPSAFPNVQFSVFGCEPKENITPIVPISNSNTQTDILVTRNIEGEKTDSQAVEIDYHYSDIVHRSPRADMESNDLNMKDDLLAQQNLMSCPANGDGVTTSDSNDELIQDSPDALSDMCSRGMVSEVPDRSIIELTAIHDENFCGDEENPNDISMVKHGSDSHTFTPSMQHTEKIMKSDHAIGHRDPIKRNIMPEPTQVYPKVTTQGLNSYCSGLDGSKNQPGGVILKTFQGHSFAFSKSKTKTSSSSIHNSTSRTWHRAGNNNPPTSLPRIKPSAGTFPPKRPTLERKGNFQNTSYIRKGNSLVRKPTPASAIPQVSSANRPPLGLDEIPKNTRSEGRADVTDQSIYLKTAVSSAPLKRQKTPPLPIDTKSEEKISSPLVEPPSSGCCENTSDXRKFIETNDAPDSSEDVLKQYETPENQTGPSNNGESQFEANDGNISSLNSKKIVYIKPKTNXLVATSNACDVIISTDDKGQTAFSDSYYKRRKXQLVRTTFESHINQTVAMPNSTVNSDGQRASKVLSNRRFTKRRSHKVAGISCKSSRASLVWTLRSKNSSENDRGSSHYQKVLPHLFPWKRTTYLRSFIHNSASSFNSSSLSAIGKKLLLLRKRDTVYTRSTHGFSLWKSKVLGVGGSSLKWSKSIEKHSKKANEEATLAVAAVEKKKREHKDVACIGSQAKRERIFRIGSVRYRMDPSRRTLQRISDDESQSSSICSGLAAKRAYIPRRLMIGNDEYVRIGNGNQLIRDPKKRTRKLANEKVRWSLHTARQRLARKQKYCQFFTRFGKCNKDGGKCPYIHDPSKIAVCTKFLNGLCSTPNCKLTHKVIPERMPDCSYFLQGLCSNGTCPYRHVNVNPKASICEGFLKGYCADGNECRKKHSYVCPTFEATGTCAQGTKCKLHHPKKQSKGKKRKRSGDQNNCXGRYFGSIPVDVSEPGTMLPPREHQQQNDELEKELSDYISLDVIEEEAADTVDQSFEPSTFCDNNSLDLQLDTCDELIKPFLLISKFTSQSSQSSSLQA

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01855	21932	32047	-

Gene family

Gene family	subfamily
Transcription Factors Family	C3H

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0046872 metal ion binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
--	--	--	--	--	--

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	12.832
SRR1783600	control	12.973
SRR1783602	moderate drought stress	21.600
SRR1811619	moderate drought stress	21.264

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	9.588
DRR006520	Root Summer glycyrrhizin high producing strain	9.508
DRR006521	Root Winter glycyrrhizin high producing strain	15.440
DRR006522	Root Winter glycyrrhizin high producing strain	14.904
DRR006523	Root Summer glycyrrhizin low producing strain	11.225
DRR006524	Root Summer glycyrrhizin low producing strain	11.132
DRR006525	Leaf Summer glycyrrhizin high producing strain	10.320
DRR006526	Leaf Summer glycyrrhizin high producing strain	10.033

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	25.314
SRR2868004	Drought Stress (root)	33.866
SRR2967015	Control (root)	33.803

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	13.028
SRR9715740	Leaf	10.987
SRR9715741	Leaf	15.585
SRR9715739	Root	1.286
SRR9715742	Root	10.284
SRR9715743	Root	8.533

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	15.191
SRR8749028	MeJA induced 9h	20.919
SRR8749029	MeJA induced 9h	13.441
SRR8749030	Uninduced	25.134
SRR8749031	Uninduced	33.858
SRR8749032	Uninduced	22.651

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	22.849
SRR8400027	Control - Root	21.724