Gene detail information of Glyur001855s00032355 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G21550.1 | 4.00E-20 | Calcium-binding EF-hand family protein |
| NR | XP_003589594.1 | 3.88E-66 | Calmodulin-like protein [Medicago truncatula] |
| COG | YP_003116483.1 | 5.00E-07 | signal transduction protein with EFhand domain [Catenulispora acidiphila DSM 44928] |
| Swissprot | tr|Q9LPK5|CML44_ARATH | 4.00E-26 | Probable calcium-binding protein CML44 |
| trEMBL | tr|G7I8G4|G7I8G4_MEDTR | 1.00E-66 | EF hand calcium-binding family protein {ECO:0000313|EMBL:AES59845.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01855 | 12512 | 12991 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001855s00032355.1 | PF13202.1 | EF-hand_5 | 10 | 34 | 1.90E-07 |
| Glyur001855s00032355.1 | PF13499.1 | EF-hand_7 | 94 | 152 | 5.80E-10 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.000 |
| SRR1783600 | control | 0.000 |
| SRR1783602 | moderate drought stress | 0.015 |
| SRR1811619 | moderate drought stress | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.136 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.000 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 2.309 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 2.586 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.920 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.894 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 54.090 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 53.310 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.490 |
| SRR2868004 | Drought Stress (root) | 0.524 |
| SRR2967015 | Control (root) | 0.160 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 30.150 |
| SRR9715740 | Leaf | 22.094 |
| SRR9715741 | Leaf | 16.625 |
| SRR9715739 | Root | 0.000 |
| SRR9715742 | Root | 0.129 |
| SRR9715743 | Root | 0.369 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.113 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.000 |
| SRR8400027 | Control - Root | 0.039 |