Gene detail information of Glyur001855s00032354.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G28530.1 | 4.00E-36 | FAR1-related sequence 10 |
| NR | XP_003615778.1 | 7.65E-80 | FAR1-related protein [Medicago truncatula] |
| Swissprot | tr|Q9LKR4|FRS10_ARATH | 6.00E-44 | Putative protein FAR1-RELATED SEQUENCE 10 |
| trEMBL | tr|A0A072UV08|A0A072UV08_MEDTR | 3.00E-80 | FAR1 DNA-binding domain protein {ECO:0000313|EMBL:KEH33684.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01855 | 7320 | 9227 | - |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | FAR1 |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001855s00032354.1 | PF03101.10 | FAR1 | 70 | 157 | 1.10E-10 |
| Glyur001855s00032354.1 | PF10551.4 | MULE | 232 | 271 | 3.50E-06 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.126 |
| SRR1783600 | control | 0.218 |
| SRR1783602 | moderate drought stress | 0.162 |
| SRR1811619 | moderate drought stress | 0.129 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.347 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.160 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.247 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.136 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.124 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.148 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.210 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.105 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.116 |
| SRR2868004 | Drought Stress (root) | 0.000 |
| SRR2967015 | Control (root) | 0.094 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.108 |
| SRR9715740 | Leaf | 0.000 |
| SRR9715741 | Leaf | 0.045 |
| SRR9715739 | Root | 0.052 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.000 |
| SRR8749028 | MeJA induced 9h | 0.000 |
| SRR8749029 | MeJA induced 9h | 0.000 |
| SRR8749030 | Uninduced | 0.038 |
| SRR8749031 | Uninduced | 0.009 |
| SRR8749032 | Uninduced | 0.030 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.056 |
| SRR8400027 | Control - Root | 0.070 |