Gene detail

Gene detail information of Glyur001852s00037942

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G01650.1	4.00E-130	RING domain ligase1
NR	XP_003622329.1	0	E3 ubiquitin-protein ligase RGLG2 [Medicago truncatula]
Swissprot	tr\|Q9SS90\|RGLG1_ARATH	8.00E-160	E3 ubiquitin-protein ligase RGLG1
trEMBL	tr\|G7L6A8\|G7L6A8_MEDTR	0	E3 ubiquitin-protein ligase RGLG2-like protein {ECO:0000313\|EMBL:AES78547.1}

Sequence

Transcript Sequence

>Glyur001852s00037942.1
GGATTTTTGTATGGAGGAGTCGTGTTCGTATGTGAAAAGCCTCCTCTTTTTTTCTCTTTTACTTCTTAATGCATGGAACAGTTTGAGAAGTTGCTTGGAAAGTGGAATCTGCNACCTCGTTTTATAGCACTTTGGAAATATTGGTGTTTGTATATTATTTGCTTTATTCAGATTGGTTTGATTTTGTGACTTTTATAATATTTTTCTAAGGAGGACTGAGCTAATGGGGGGACAAAGTTCTAAGGAGGATAGTTGGAGGCAGAGTTCAAGTTCTTGGAGTGCATATTTTGATCCCCTGTCAANTTATGGTCAGGGGAGTTATATCTATGATGATGATCCACAACCCTCTTATTCTTCTTCAAATCTGTATNATGACTCGCCTTCTCAATATTATTACGGCTGTGATGAACCTTATCCTCGTGATCATAGTACCAAGCTACAGAGGAGGTACTCANGGATTGCTGATAGTTACAATTCCATAGATGAGGTTACTGAGGCTCTTGCACGTGCAGGCCTTGAGTCTTCCAATCTTATTGTTGGTGTTGATTTCACCAAGAGCAATGAATGGACAGGAAAGAATTCATTTCATAGACAAAGCTTGCATCACATTGGCAGTGGTCTAAATCCCTATGAACAAGCAATATCAATTATTGGGAAAACTTTGGCAGCATTTGATGAGGATAACTTGATTCCTTGTTTTGGATTTGGAGATGCATCAACACATGATCAAGATGTCTTCAGTTTCTATCCGGATGGAAGTTTTTGCAATGGATTTGAAGATTTGTTGAGTCGATATAGGGAAATTGTTCCTCATCTACGACTAGCAGGTCCTACTTCATTTGCGCCAATAATTGAAATGGCCATGACAATTGTTGAGCGGAGTGGGGGTCAATACCATGTTTTGGTGATAATAGCAGATGGCCAGGTAACAAGAAGTGTTGATACTATACATGGGAAACTAAGCCCACAGGAACAGAAGACTGTGGATGCCATTGTTAGGGCCAGTAAACTTCCACTTTCAATCATATTGGTTGGTGTTGGAGACGGACCATGGGACATGATGAAAGAATTTGATGACAATATCCCAGCTCGGGCCTTTGATAATTTTCAGTTTGTGAATTTCACGGAGATTATGTCAAAGAACATCCCTTCATCACGAAAAGAGGCAGTATTTGCACTTGCAGCATTGATGGAAATTCCTTCTCAAAAACAGGAGGCCAATGCTCCTCAAAGAGTTCCCCTCCCACCGCCTACATATAATTCCTCTCCTCAGCACGGCAACAACCGCTCAGCTGGCACAGCTCCTTCTGCCCCAAGTTCCACTTATGACAATCAAACATGGCCTTCGGATGTGGACATCAGACATGTTGTGAATGTGGACAAGATCTTCAGTCATGCCCCATCTGTAGGAGCCCCATTAACACCAGAATTAAGCTTTACTAGCATATGTGACTTGACATCAGGGTTAGATGTGGCTATATACAAGCTTGATCAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01852	16804	21821	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001852s00037942.1	PF07002.11	Copine	125	273	1.50E-51

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	0.675
SRR1783600	control	0.722
SRR1783602	moderate drought stress	1.231
SRR1811619	moderate drought stress	1.182

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	2.208
DRR006520	Root Summer glycyrrhizin high producing strain	2.283
DRR006521	Root Winter glycyrrhizin high producing strain	0.463
DRR006522	Root Winter glycyrrhizin high producing strain	0.490
DRR006523	Root Summer glycyrrhizin low producing strain	3.939
DRR006524	Root Summer glycyrrhizin low producing strain	3.718
DRR006525	Leaf Summer glycyrrhizin high producing strain	2.108
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.117

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4.105
SRR2868004	Drought Stress (root)	7.229
SRR2967015	Control (root)	5.404

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.609
SRR9715740	Leaf	0.752
SRR9715741	Leaf	1.183
SRR9715739	Root	0.638
SRR9715742	Root	5.203
SRR9715743	Root	4.788

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.050
SRR8749028	MeJA induced 9h	0.085
SRR8749029	MeJA induced 9h	0.026
SRR8749030	Uninduced	0.000
SRR8749031	Uninduced	0.000
SRR8749032	Uninduced	0.038

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	2.673
SRR8400027	Control - Root	3.973