Gene detail information of Glyur001849s00031477.2 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G16680.1 | 3.00E-92 | RING/FYVE/PHD zinc finger superfamily protein |
| NR | XP_006590859.1 | 0 | PREDICTED: uncharacterized protein LOC100784908 isoform X1 [Glycine max] |
| trEMBL | tr|I1LJ47|I1LJ47_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA11G11720.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01849 | 14117 | 21150 | - |
Gene family
| Gene family | subfamily |
|---|---|
| EAR motif-containing Proteins | other |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| -- | -- | -- | -- | -- | -- |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 9.058 |
| SRR1783600 | control | 9.491 |
| SRR1783602 | moderate drought stress | 11.619 |
| SRR1811619 | moderate drought stress | 11.702 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 13.284 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 13.404 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 11.275 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 11.035 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 16.567 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 16.407 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 7.240 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 7.330 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 15.246 |
| SRR2868004 | Drought Stress (root) | 20.463 |
| SRR2967015 | Control (root) | 20.021 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 13.231 |
| SRR9715740 | Leaf | 10.954 |
| SRR9715741 | Leaf | 16.249 |
| SRR9715739 | Root | 1.956 |
| SRR9715742 | Root | 12.583 |
| SRR9715743 | Root | 11.597 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 12.469 |
| SRR8749028 | MeJA induced 9h | 24.818 |
| SRR8749029 | MeJA induced 9h | 14.834 |
| SRR8749030 | Uninduced | 14.951 |
| SRR8749031 | Uninduced | 28.699 |
| SRR8749032 | Uninduced | 17.740 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 16.614 |
| SRR8400027 | Control - Root | 16.277 |