Gene detail

Gene detail information of Glyur001848s00041053

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G45616.1	2.00E-41	receptor like protein 6
NR	KEH28916.1	0	verticillium wilt resistance-like protein [Medicago truncatula]
COG	YP_004775215.1	8.00E-27	RHS repeat-associated core domain-containing protein [Cyclobacterium marinum DSM 745]
Swissprot	tr\|Q9C9H7\|RLP12_ARATH	5.00E-42	Receptor-like protein 12 (Precursor)
trEMBL	tr\|A0A072UHN3\|A0A072UHN3_MEDTR	0	Verticillium wilt resistance-like protein {ECO:0000313\|EMBL:KEH28916.1}

Sequence

Transcript Sequence

>Glyur001848s00041053.1
ATGAGAATTACATTAGTTTCATTGCTTTCCTTCATTCTTTGCTACTGCATAATAATACTCAGTATCCAAATCTCTGTTACCTCTGGCAAATGTCTTATTCCAATAGAGATTTCTCAGCTGAAGAGGTTAGTTACTCTTGATATCTCTTCTCTTAGCTATTTGACAGGGCAAGAGTTGAAGCTTGGGAACCCAAATCTGCAAAAGCTTGTCCAAAATCTCACCGGCATTAGGCAACTGTATCTGGATGGTGTGAGTNTAACAGCTAATGGACAGGAATGGTGCAATGCTTTGTTGCCACTGCNTGACCTGCAAGAACTGAGCATGTCTGACTGCAATCTCTCAGGACCACTTGATTCTTCCCTTGCAAGACTTGAGAATCTATCAGTCATTATTCTTGAAGGGAACAATTTTTCATCCCCAGTGCCNGAATCATTTGCCAAATTTAAAAATCTAACCACCCTCAATCTTGCATTTTGTGGGTTGACTGGAAAATTTCCACCAGAAGTATTCAGGATTGGAACATTGTCCGTCATTGACTTATCATTCAACTACAATCTCCATGGTTCTTTTCTGGAATTCCCGTTGAGTGGATCTCTTCGGACCTTGACGGTAAGTAACACAAGCTTCTCTGGAGCATTTCCACACACTATTGGTAACATGAGGCATTTATCTAAATTGGATCTTTCTTATTGTCAACTTAATGGAATACTCCCCAATTCACTGTCAAACCTCACAGAACTCAGTTANCTGGATATGTCATTTAACAGCTTCATAGGTCCAATGCCATCATTTGGCATGGCCAAAAAACTTAGCCACCTAGACCTTTCTCATAATGGTTTAAGTGGTGCAATTCCATCATCTTCTCACTTTGAAGGACTGCACAATCTTGTGAGCATTGACTTGCGTTACAATTCTATCAATGGGAGCATCCCTTCATCCCTTTTTACACTGCCATCATTGCAGAAGATTCAGCTTTCGTTCAACCAGTTNAGTAAACTTGACGAATTCATAAATGTGTCTTCCTCTATGTTAAACACCCTTGATTTAAGCAGCAATNATCTGTCNGGGCCTTTTCCAACATCNATCTTCCAGCTCAGTTCACTCTCTAACCTCAAACTTTCCTCTAACAAGTTCAATGGGTCACTGCAGCTAGATAAGTTTTTGGAGCTCAGAAATTTAACTACNCTAGACCTTTCCTACAACAACTTAACNGTCAATGCAAATGTTACCNTTGTTGACCCGTCTTCCTTTCCCAACATTAGCAACCTAAATTTGGCATCATGCAACTTGAAAACNTTCCCTNGTTTCTTGAGAAACAAATCCAAATTAGCCAATCTAGACCTTTCANATAACCAGATTCAAGGAACATTNCCCAACTGGATTTGGAAACTACAAAATCTTCAAAGCCTTAACATTTCTCACAATTTGCTCACTAATTTGGAAGGACCTTTGCAAAATCTTACTTCCAACTTGATATCCCTTGACCTTCATAACAACCATCTGCAAGGGCAAATACCTGTTTTTCCTAAATATGCTGCCTATTTGGATTACTCAATGAACAAATTTAGCTCTATTACCCCGCAAGATATNGGAAAGAAATGGAGCAATGACAGCATTGACAAGTTTCTCATGGTAGTTCTTCCAATATTTGGGATGGCTTATACACCCATTGGTGATGATGATGAAGAAGGGGATGACACAGAAGAGAAGGATTCAAATATGACAGAGGACAGTGATTATAATGAAGAAGAGGAAGATGGTTGGGGTTATCCAAGGTTCAGAGGGAGGTATTGTGTCTTTTGTTCCAAACTTGATATCACTAAGAAAAAGGTCATTCATGACCCCAGCTGCACAAGCTACCACTCATCACCACCTTCAAATTCCACTCATTCATCAGATTCATATTCTTCTTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01848	41087	44485	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001848s00041053.1	PF13855.1	LRR_8	103	160	1.70E-07
Glyur001848s00041053.1	PF13855.1	LRR_8	198	256	4.20E-09
Glyur001848s00041053.1	PF13855.1	LRR_8	269	329	3.40E-09
Glyur001848s00041053.1	PF13516.1	LRR_6	390	404	0.053
Glyur001848s00041053.1	PF13855.1	LRR_8	418	477	1.00E-07
Glyur001848s00041053.1	PF00560.28	LRR_1	490	508	0.32

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.321
SRR1783600	control	3.825
SRR1783602	moderate drought stress	1.757
SRR1811619	moderate drought stress	1.745

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	11.482
DRR006520	Root Summer glycyrrhizin high producing strain	10.713
DRR006521	Root Winter glycyrrhizin high producing strain	6.122
DRR006522	Root Winter glycyrrhizin high producing strain	6.955
DRR006523	Root Summer glycyrrhizin low producing strain	17.609
DRR006524	Root Summer glycyrrhizin low producing strain	16.370
DRR006525	Leaf Summer glycyrrhizin high producing strain	1.733
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.118

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4.171
SRR2868004	Drought Stress (root)	9.429
SRR2967015	Control (root)	8.481

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	28.576
SRR9715740	Leaf	23.762
SRR9715741	Leaf	28.984
SRR9715739	Root	7.632
SRR9715742	Root	23.493
SRR9715743	Root	18.572

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	22.826
SRR8749028	MeJA induced 9h	36.982
SRR8749029	MeJA induced 9h	11.261
SRR8749030	Uninduced	28.306
SRR8749031	Uninduced	17.980
SRR8749032	Uninduced	11.973

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	4.541
SRR8400027	Control - Root	10.587