Gene detail information of Glyur001846s00041066 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G00030.1 | 1.00E-77 | Plastid-lipid associated protein PAP / fibrillin family protein |
| NR | XP_007140979.1 | 8.16E-129 | hypothetical protein PHAVU_008G157000g [Phaseolus vulgaris] |
| Swissprot | tr|O81304|PAP11_ARATH | 4.00E-97 | Probable plastid-lipid-associated protein 11 |
| trEMBL | tr|V7B7Y4|V7B7Y4_PHAVU | 3.00E-129 | Uncharacterized protein {ECO:0000313|EMBL:ESW12973.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01846 | 29412 | 35331 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001846s00041066.1 | PF04755.7 | PAP_fibrillin | 49 | 213 | 5.20E-38 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 27.470 |
| SRR1783600 | control | 27.277 |
| SRR1783602 | moderate drought stress | 13.670 |
| SRR1811619 | moderate drought stress | 14.253 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 6.587 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 6.852 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 8.434 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 8.259 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 2.621 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 2.686 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 41.324 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 40.748 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 1.465 |
| SRR2868004 | Drought Stress (root) | 1.214 |
| SRR2967015 | Control (root) | 1.002 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 52.937 |
| SRR9715740 | Leaf | 76.699 |
| SRR9715741 | Leaf | 50.321 |
| SRR9715739 | Root | 9.746 |
| SRR9715742 | Root | 9.100 |
| SRR9715743 | Root | 9.822 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.801 |
| SRR8749028 | MeJA induced 9h | 0.588 |
| SRR8749029 | MeJA induced 9h | 0.592 |
| SRR8749030 | Uninduced | 0.000 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.177 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 16.104 |
| SRR8400027 | Control - Root | 17.766 |