Gene detail

Gene detail information of Glyur001843s00031852

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G20670.1	5.00E-105	DNA-binding bromodomain-containing protein
NR	XP_007136025.1	0	hypothetical protein PHAVU_009G011800g [Phaseolus vulgaris]
Swissprot	tr\|Q338B9\|GCN5_ORYSJ	1.00E-13	Histone acetyltransferase GCN5
trEMBL	tr\|V7AR21\|V7AR21_PHAVU	0	Uncharacterized protein {ECO:0000313\|EMBL:ESW08019.1}

Sequence

Transcript Sequence

>Glyur001843s00031852.1
AGAGAGAGAGAGGTTTGGACCTGTTTGTTTGGGGAGCGAGAAAAGAGGAGGAAACAATGGGCGAGGTATCTGAAACGATGACGAAGAGGAAGAAGAAGGGTCGCCCATCTCTTTTGGATCTCCAAAAGCGATCCCTCAAAAAACAGCAGCAACAGCAACATCAAAGACAAAGACAAAACCACCCGAATTTAACCAATTCGTATCCCAACAACAACGTTAATGTTCCTCAACAAGACGACGACGACGACGAGCGCAGGGAGAAGAAGCACAAGCTCCTTGTGGGTCTCAATTCCCATCACCATCTCCAACACCCAACATTATTCCCCAACAATTCTTCTTTCCCTCACGCCGATCCCGACGCCACTCACAAGAGGCGCAAGATTGACCCTTTCCACCACGGATCAGATGAAACGGATGGAAAGGTTCCGAAAGCGACTGACAGTAAACATGGTATGAATGAAGCTTATGGTTCACAGGGGGAGTCCGGTCCCACTACACCTTTGCCAGACAAAAAGCTCTTGCTGTTTATCCTTGACAGACTTCAAAAAAAGGACACACATGGGGTATTCTCTGAGCCGGTGGATCCAGAAGAGCTCCCTGATTATCATGACATCATTAAGCACCCGATGGATTTTGGAACTGTAAGGAAGAAGTTGGATGGGGGGCTATATATCAACTTGGAACAGTTTGAGAACGATGTGTTCTTGATATGCTCTAATGCAATGCAATACAATTCACCAGATACTATTTACTATCGACAGGCTCGTGCCATGCAAGAGATTGCAAGGAAGGACTTTGACAATCTGAGACAAGATAGNGATGGTGATAGTGAACCGCAACCCAAAATTGTGCACAGAGGAAGGCCACCAGGCAAGCACACAAGAAAGTCACTGGGCATGTCTCCATCTGAGCGTGTTGCTCCTGAATCTTCCTCTGATGCAACTCTTGCTTCTGGTGGGGATATTGCTAGTGGCTCCAATGGTTATAATCTAAGAAAAGGACTAAGCAAATTTCAGCCTACAGATTCATCAGCCAGGGCCTCCCAGGGCAACAGTGGAGGTTATACTGGTTGGACGCCTGACTGGGAGAATGAATTTCCTGCTTCTGTTTTAAAAGCTGTGTTAAGGTATGGAAAGAAGCAGTATACAGTTGACGAGACCAGGCGTGACACTTACAAAAATCCAGTGGCTTCAGGAAATGAACCACCAGTGCTGGCAACATTTGAAGATAANGTGAAGCAACTTCTTGCCGTTGGTTTACATGTGAAGCATAGCTATGCAAGAAGCCTAGCCCATTTTGCTGCAGATCTTGGTCCTATTGTTTGGAAGATTGCTGCAAGGAAAATCAGCAGTGTTTTGCCAAAAGGACATGAATTTGGTCCTGGATGGGTAGCTGATGACGATGTATCACAGAGGCAACACTTCCCAATTTGCGATGAGAGAAATTCGGACCCTCCTGTACCAGAGGATTACAGAAGTAGATTTGCTTCTCCATCAGGATCCTTCTCTCTTGCAAATACACCATGCTTGCAAAGTGCAGACACGGTAATGAATAGAGAATTGAATTACCAAAATGAATTGAATACAGTCAACAGTGTTAGTGGTGGGAGTGAATCCATAATTCCAGAGAGGATTCAGCAGGAATCCATGATGCACTCTAATGACTTGGGCTCTAGTGGTCGATTAGGTTCTAGTTTTTCACCTCAAATGAAGATGGTAAATCTTGCAGACTTAACTGGGTCGTCGACAAGTGCTGGGAATGTTCCTCAAATGTTTGACATGGATTCCAGAAACAGCCTTACCAGCCATATTGCACCTACAAATATTAATCCACCACCTCTCAGGGCCCAATTCTTAAACAAGTCAAGTCAATTAGATTCCAGTAATTTGTTAGCCAGGGAATCCGGATTTGAGTCGCGAAGTTTGTCTCAAGGGTTTGGTGGGAAATCATCTTGGCAGGGAATGGAAGTTCCCACTAAACAGAATTCCTTTTCACTTGCTAATGACTTNAATGGGATGATCGGAGCAACAAATTCACGTAGTTCCAGTGTGGATACTGGTTCTCAGCTGCAGCCAAATCTGGCATTGCAGCTATGATATATATTATTTTTTAGATTGGAATTTTCTCTTGCAATTTTCTAACATGATAATGTCANGAGGGAGAAAGACGAAAATAAATTAATGGATCCTAGTCAAATAATGGTGGGTCTTGCTATATTTGTTTTTGTCTTTTTTCTCTCGNGACATTGTCATGTTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01843	31325	35820	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001843s00031852.1	PF00439.20	Bromodomain	158	237	2.20E-24

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.852
SRR1783600	control	2.756
SRR1783602	moderate drought stress	1.914
SRR1811619	moderate drought stress	1.928

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.080
DRR006520	Root Summer glycyrrhizin high producing strain	4.171
DRR006521	Root Winter glycyrrhizin high producing strain	11.123
DRR006522	Root Winter glycyrrhizin high producing strain	10.862
DRR006523	Root Summer glycyrrhizin low producing strain	2.808
DRR006524	Root Summer glycyrrhizin low producing strain	2.747
DRR006525	Leaf Summer glycyrrhizin high producing strain	8.038
DRR006526	Leaf Summer glycyrrhizin high producing strain	8.229

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	7.459
SRR2868004	Drought Stress (root)	11.461
SRR2967015	Control (root)	11.054

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	7.183
SRR9715740	Leaf	9.297
SRR9715741	Leaf	9.892
SRR9715739	Root	1.240
SRR9715742	Root	3.695
SRR9715743	Root	3.503

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	11.727
SRR8749028	MeJA induced 9h	29.757
SRR8749029	MeJA induced 9h	14.361
SRR8749030	Uninduced	9.093
SRR8749031	Uninduced	17.387
SRR8749032	Uninduced	11.911

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	9.491
SRR8400027	Control - Root	10.186