Gene detail information of Glyur001843s00031850.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT4G37420.1 | 3.00E-136 | Domain of unknown function (DUF23) |
| NR | XP_004501117.1 | 0 | PREDICTED: UPF0392 protein At1g27200-like [Cicer arietinum] |
| COG | YP_003709274.1 | 2.00E-08 | hypothetical protein wcw_0906 [Waddlia chondrophila WSU 86-1044] |
| Swissprot | tr|Q94K98|Y1720_ARATH | 3.00E-87 | UPF0392 protein At1g27200 |
| trEMBL | tr|A0A072V3C5|A0A072V3C5_MEDTR | 0 | Glycosyltransferase family 92 protein {ECO:0000313|EMBL:KEH36327.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01843 | 28198 | 30006 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Carbohydrate-Active enzymes Family | GTnc |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001843s00031850.1 | PF01697.22 | Glyco_transf_92 | 296 | 530 | 4.50E-19 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 1.381 |
| SRR1783600 | control | 1.452 |
| SRR1783602 | moderate drought stress | 0.905 |
| SRR1811619 | moderate drought stress | 0.866 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.541 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.495 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.493 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.526 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.727 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.674 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 2.398 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 2.350 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 3.755 |
| SRR2868004 | Drought Stress (root) | 3.188 |
| SRR2967015 | Control (root) | 3.312 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 3.696 |
| SRR9715740 | Leaf | 5.084 |
| SRR9715741 | Leaf | 7.077 |
| SRR9715739 | Root | 1.636 |
| SRR9715742 | Root | 1.912 |
| SRR9715743 | Root | 1.779 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.755 |
| SRR8749028 | MeJA induced 9h | 1.543 |
| SRR8749029 | MeJA induced 9h | 1.898 |
| SRR8749030 | Uninduced | 2.396 |
| SRR8749031 | Uninduced | 1.766 |
| SRR8749032 | Uninduced | 2.817 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 2.928 |
| SRR8400027 | Control - Root | 3.323 |