Gene detail

Gene detail information of Glyur001841s00029501

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT2G39780.1	3.00E-92	ribonuclease 2
NR	XP_004510730.1	1.45E-142	PREDICTED: ribonuclease 2-like [Cicer arietinum]
COG	YP_005032327.1	1.00E-11	putative ribonuclease [Azospirillum brasilense Sp245]
Swissprot	tr\|P42814\|RNS2_ARATH	2.00E-113	Ribonuclease 2 (Precursor)
trEMBL	tr\|I3S414\|I3S414_LOTJA	1.00E-138	Uncharacterized protein {ECO:0000313\|EMBL:AFK35006.1}

Sequence

Transcript Sequence

>Glyur001841s00029501.1
ATGAAAAATGAAGGGCATTATAAGAACACAACCCTAGGGCGTGTTGTGTTGAGTCAGCAGCTTTTACCTGATCGTGATCCGAAACGGGAGTGTGATTTGGTAAAGTGGATTCGAGGGTGGAGAGTCGAGCTTGGAGAGCGTCAAATTGGTGGGTCATGTGAGAGGCGAGAGCGTGACGATCAGACCAGAGGTCCTTCCAAACGAAATGGGAAACCACAGCGGCTGAGGCATAAGTTTACCGTTGTTGTTCACCATAGAGGGGTGTTTGTGAAAGATGCAATTTTGATATACAATGAGGGAGAAATTGATGCATTTTGTAATCTGAATTTGGATAGATGGTCGTATCCTGAGGCCTTATCCCTAGTGAAGGAATTAAGGTATGTAGATTTTGTGAAGTTATGGTGGAAGGAGAGTAATGGTGGTATTGAAGAATGCTTGAAGTCAATTACTTCAAATAGCCATGCTCTTGGGTTAGAAAAAGTGGGATTAGAGAGCCAAACGCATCTTCACGCAAACAAACGAACGATGCCTCCTCTGACAAAAGCTCTCGGTCTTCTTCCATGGCTATGCCTATTGCTGGTGTCCGCGGGAACAGCTCCGGCACGTGCCACGGTGGAGGAGTTGGAGCGAGTAGCGGTCGGAGGAAGGCGTCAGAGAGAGTTTGACTATTTCGCATTGGCGTTGCANTGGCCTGGCACTTATTGCCAACGCACACGCCATTGCTGTTCCTCTAACGCTTGCTGCAGAGGCTCCAATGCTCCAACAACATTCACCATACATGGACTCTGGCCTGACTATAATGATGGAACGTGGCCTGCCTGTTGCTCTAAATCTCGTTTTGACCCAAAAGAGATATCAACATTGACTGATGCTTTAGAGCAATATTGGCCATCATTGAGCTGTAGCTCACCATCAACATGCGCGGGTGGAAAAGGTTCATTTTGGGCTCATGAGGTGGCAAAATCTTTTGGTTTTCTTGCGCTAGTCTTCCAGCTTTCTAACATTGGAATTTCACTTGCAGAGAAGCATGGTACATGCTCATATCCNGTGTTTCGAAATGAATACGATTATTTCCTGGCAACGCTGAATCTCTATTTCAAATATAATGTTACGAGAGTTCTAAATGAGGCTGGATATGTTCCGTCAAATACAGAAAAGTATCCCCTTGGAGGCATTATCTCTGCCATTGAGAATGCTTTCCATGCATCTCCTTTAATAGTTTGCTCAAAAGATTCTGTGGAGGAACTTCGCCTATGCTTCTATAAGGACTTCAAGCCACGTGATTGTGCTGTTGGACCAGGCATTGGAATGGACATGGTTACTTCAAAAGGATCATGTCCTAAATATGTTGGCTTGCCAGAACTTGTATCATTAGGTAAGTTCATTACTGTTTCATCTTTATACCAGTATAACTATTGCTGTTTCAGACTTTCAGTTGCTCTTGACTTGAACTGTCAAACTAGTTTGCTAAAATTTACATATAAGTGGACTGATGGATACAGGAAGAAGGAACTGGTCCATAGTCCATTTCCGTTGACATTTAATGAAGGATATTTTTGGAAATTGGTCAAAATTCTCTTGAACTTTGTGGGTAAATCTGAAACTGGTTGACTTGAGGCCACTTAGAGACACCGGGCTGGTCAGCTCATTTTAATATTGATTGAACCATTGACACTTGGTCAAAACCTAGTGGCCGGAGATTGATTTATTTATGAGGCTGCATTTTCAGTTTGCTTCATTTAACTGTCAGTAATGACATTGTTAGAGATATAGTATGAAACCATTCACGTGTCTTTACCTAAAAGCTTAAGCTTTTGGGATGGTTAGTAAATGATATGATATTAGAGCCTCTATGACTAAGTGGTCTAGAGTTTGATTCTTGCAGCTCCCATTCTTCAAATAAAAAGTTAATTTTTAGCCAAAGGTAGGTGGGCAGTTGGCTTGTGTATTGTGCATACATCGAACCCAAAGGGCTCTTACATGAGGGAGTGATTAGAGATATGGTAATCTTGGTTGCTGAGGAAGATGCCTATGTTTGTTATAGGTAACGTNTACATGATTACCACAGGCATCACATACTCCTTACCTGTGTCTCAAATGCATTATATTTGAGGGTATCATGTGATCCCTTTCATAATATGTGGGAGGGTATATATCTAGAAATTCAAAGTTGGATATTTAAAATTGTTAAATGCAGCTAAACAAGGGCATAGTAGTATAGTACATGCCTCGACTAACTACTGATACGTCAAACAGGAGACTCCTAAATATCCTTGCATCTTGTAGATGCCT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01841	24618	31186	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0003723 RNA binding

GO:0033897 ribonuclease T2 activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001841s00029501.1	PF00445.13	Ribonuclease_T2	221	319	7.60E-24
Glyur001841s00029501.1	PF00445.13	Ribonuclease_T2	341	430	5.50E-18
Glyur001841s00029501.2	PF00445.13	Ribonuclease_T2	222	283	1.50E-11
Glyur001841s00029501.2	PF00445.13	Ribonuclease_T2	305	394	4.90E-18

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	7.089
SRR1783600	control	7.221
SRR1783602	moderate drought stress	8.270
SRR1811619	moderate drought stress	8.789

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	8.179
DRR006520	Root Summer glycyrrhizin high producing strain	8.778
DRR006521	Root Winter glycyrrhizin high producing strain	13.259
DRR006522	Root Winter glycyrrhizin high producing strain	13.224
DRR006523	Root Summer glycyrrhizin low producing strain	10.911
DRR006524	Root Summer glycyrrhizin low producing strain	11.921
DRR006525	Leaf Summer glycyrrhizin high producing strain	10.513
DRR006526	Leaf Summer glycyrrhizin high producing strain	9.997

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	118.987
SRR2868004	Drought Stress (root)	98.456
SRR2967015	Control (root)	122.370

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	19.161
SRR9715740	Leaf	19.734
SRR9715741	Leaf	25.179
SRR9715739	Root	19.341
SRR9715742	Root	11.027
SRR9715743	Root	12.482

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	18.615
SRR8749028	MeJA induced 9h	34.895
SRR8749029	MeJA induced 9h	16.900
SRR8749030	Uninduced	27.779
SRR8749031	Uninduced	17.454
SRR8749032	Uninduced	24.531

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	46.933
SRR8400027	Control - Root	52.323