Gene detail

Gene detail information of Glyur001840s00036324

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G37070.2	8.00E-119	Acyl transferase/acyl hydrolase/lysophospholipase superfamily protein
NR	XP_003611772.1	0	Patatin-like protein [Medicago truncatula]
COG	YP_005071538.1	7.00E-40	patatin-like protein [Arthrospira platensis NIES-39]
Swissprot	tr\|O23179\|PLP1_ARATH	2.00E-157	Patatin-like protein 1
trEMBL	tr\|G7K805\|G7K805_MEDTR	0	Patatin {ECO:0000256\|RuleBase:RU361262}

Sequence

Transcript Sequence

>Glyur001840s00036324.1
ATGGAAAACTACTCCAAAACTTCCCTCGAAATTCCTCCTCCAAAATATGTGAATCTCATTACGGTTCTTAGCATTGATGGGGGAGGCATCCGAGGAATCATTCCCGGTGTTATTCTTGCCTACCTTGAGTCTCAACTTCAGGAGTTAGATGGTGAGGATGCAAGGCTTTCAGATTATTTTGATGTAATTGCTGGGACAAGCACAGGGGGTCTCGTTGCTTCCATGTTAGCAGCTCCCGATCTAAAGGCCAACAATTTCACCACCACATACACGTGCAGGGGAATATTTGCGCCGCTCATAAACATAACGAAAGCTTTGACAGGAAGTATGTACGACGGGAAGTATCTGCACGAGCTGATAAGAAACAAGTTAGGGGACACAATGTTGCGCCAAACCTTAACAAACGTTGTTATTCCAACTTTTGACGTCAAGAAACTTCAACCAACCATCTTTTCCTCCTATCAGATAGCAGCTGACCCGGCTCTAGATGTACCACTGTCAGACATTTGTATAGCCACATCGGCTGCTCCAACTTATTTGCCAGCTCACTATTTTACAAAACAAGATGAAAAAGGGAAAGTAATTAAAGAATTCAACCTCATCGATGGTGCCGTGGCTGCTAATAATCCGACTTTGGTTGCAATTAGAGAAGTGACCAAGGAACTCATAAGGAACCCAGATGGGAGTGGAGTGAACCCTTTAGGCTTTGATCGTTTTCTTGTTCTGTCANTAGGGACTGGATCAAACAGGAGCGAGCACAAGTACAACGCTAAGATGGTGTCCAAATGGGGGGTTCTCACCTGGTTATTCAACTCTGGGTCAACTCCCATCGTAGATTGTTTCAATGAAGCAAGCAATGATATGGTTGACTACCACAACTGTGTTCTTTTCAGTGCGCTTCAGTCTCAAGACAACTACCTCCGGATTGAAGACGATACATTGATGGGGGAATTAGCTTCTGTGGATGTAGCTACTAAAGAGAATCTGAATAATCTGGGAAAAGTGGGGGAGCAGTTACTGACGAAAAGAGTTACACGAGTGAATCTAGATACGGGAATATGTGAACCAGTTCAAGATAAAGGCAGCAACGAGGAAGAACTCAAAAGGTTTGCGAAATTACTCTCGGAGGCAAGAAAACAGAGAAAGTCCAACTCACGAGATGGGAAGTAA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01840	17387	19794	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process

GO:0006629 lipid metabolic process

GO:0008152 metabolic process

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001840s00036324.1	PF01734.17	Patatin	23	215	3.80E-24

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	1.000
SRR1783600	control	1.092
SRR1783602	moderate drought stress	1.046
SRR1811619	moderate drought stress	1.121

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	0.000
DRR006520	Root Summer glycyrrhizin high producing strain	0.156
DRR006521	Root Winter glycyrrhizin high producing strain	0.000
DRR006522	Root Winter glycyrrhizin high producing strain	0.000
DRR006523	Root Summer glycyrrhizin low producing strain	0.000
DRR006524	Root Summer glycyrrhizin low producing strain	0.000
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.407
DRR006526	Leaf Summer glycyrrhizin high producing strain	0.293

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	42.971
SRR2868004	Drought Stress (root)	56.197
SRR2967015	Control (root)	118.601

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	0.109
SRR9715740	Leaf	0.141
SRR9715741	Leaf	0.066
SRR9715739	Root	0.085
SRR9715742	Root	0.542
SRR9715743	Root	0.262

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.561
SRR8749028	MeJA induced 9h	10.878
SRR8749029	MeJA induced 9h	4.855
SRR8749030	Uninduced	10.516
SRR8749031	Uninduced	16.403
SRR8749032	Uninduced	4.703

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	23.969
SRR8400027	Control - Root	28.837