Gene detail

Gene detail information of Glyur001840s00036323

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G37040.1	2.00E-149	methionine aminopeptidase 1D
NR	XP_003517292.1	0	PREDICTED: methionine aminopeptidase 1D, chloroplastic/mitochondrial isoform X1 [Glycine max]
COG	YP_289029.1	3.00E-104	methionine aminopeptidase [Thermobifida fusca YX]
Swissprot	tr\|Q9FV50\|MAP1D_ARATH	0	Methionine aminopeptidase 1D, chloroplastic/mitochondrial {ECO:0000255\|HAMAP-Rule:MF_03174} (Precursor)
trEMBL	tr\|V7CIS5\|V7CIS5_PHAVU	0	Methionine aminopeptidase 1 {ECO:0000256\|HAMAP-Rule:MF_03174}

Sequence

Transcript Sequence

>Glyur001840s00036323.1
GAAAATTGGGGGAAATTTTGAAGGAAGAAAACGGCGAGAAGTAGAGGAACGGATAACAGTGGAGTCCAGGTGCAGAATACGCCGTAGAAAGGAAGAATGGCGAGCGGTGTGTCAGTGCAACTGCAAATGAGGTTCAAGTCTTCTTTCATGGGAGATCGACTCCTTCGCTGCTCAAGGCACCACCCCCTTCCTCAACTATTCCGTTACAACCCTGGAGGGAAGCATGTTTCGATGCAGTTGTCTCGAACATTTTCTGGCTTGACCAATCTCTTATTTAATAGAAGGAATATAGATGAATTGGCTAACAGCAAGCGTAAACGCCTGAGACCTGGAAAAATTTCTCCACGTCGAGAAGTGCCGAAGGACATACCAAGGCCTCCATATGTAAAATCTATGACGCCGGCAGGACTTGTGAGTGGACCTGAAGTGCATGATGAGAAGGGGATAGAATGCATGAGAGCTTCTGGAAGGCTTGCAGCAAAAGTTCTTCAGTATGCTGGCACGCTAGTCAAGCCAGGCATAACAACAGATGAAATTGACCAAGCAGTTCACCAAATGATAGTTGATAATGGTGCATACCCGTCTCCTCTTGGCTATGGTGGTTTTCCAAAGAGTGTCTGCACATCTGTGAATGAATGCATTTGCCATGGAATACCAGATTCCTGTGCACTTGAGGACGGTGATATAATCAACATTGATGTTACTGTTTATCTAAATGGTTATCATGGTGACACATCGGCAACCTTCTTTTGTGGAGATGTTGATGATGAGGCCAGAAAACTAGTTCAGGTAACTAAAGAATGCCTAGATAAAGCGATATCAATATGTGCACCAGGAGTGGAATTCAAGACAATTGGCAAAAAAATTCATGATCATGCAGATAAATATCGTTATGGTGTGGTGCAACAGTTTGTTGGCCATGGAGTTGGACGTGTTTTTCATGCTGATCCAGTTATTCTTCACTATAGAAACAATGAAGGTGGACGGATGATGCTAAATCAAACCTTTACAATTGAACCAATGCTGACTATGGGCAGCATCAATCCTGTGATGTGGAATGACAATTGGACAGTTGTAACCGAAGATGGAAGTCTTTCAGCTCAGTTTGAACACACCATTTTGATAACCCCTGATGGGGCTGAGATTTTGACTCAATGCTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01840	11338	17101	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006508 proteolysis

molecular_function

GO:0004177 aminopeptidase activity

GO:0008235 metalloexopeptidase activity

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001840s00036323.1	PF00557.19	Peptidase_M24	118	345	2.70E-47

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	7.366
SRR1783600	control	7.213
SRR1783602	moderate drought stress	5.753
SRR1811619	moderate drought stress	5.386

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	14.267
DRR006520	Root Summer glycyrrhizin high producing strain	13.507
DRR006521	Root Winter glycyrrhizin high producing strain	9.323
DRR006522	Root Winter glycyrrhizin high producing strain	8.550
DRR006523	Root Summer glycyrrhizin low producing strain	10.759
DRR006524	Root Summer glycyrrhizin low producing strain	10.683
DRR006525	Leaf Summer glycyrrhizin high producing strain	49.694
DRR006526	Leaf Summer glycyrrhizin high producing strain	47.297

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	26.820
SRR2868004	Drought Stress (root)	26.823
SRR2967015	Control (root)	22.969

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	48.320
SRR9715740	Leaf	62.887
SRR9715741	Leaf	43.246
SRR9715739	Root	2.167
SRR9715742	Root	5.712
SRR9715743	Root	6.342

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	25.837
SRR8749028	MeJA induced 9h	20.003
SRR8749029	MeJA induced 9h	16.814
SRR8749030	Uninduced	20.233
SRR8749031	Uninduced	18.494
SRR8749032	Uninduced	15.543

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	27.410
SRR8400027	Control - Root	26.766