Gene detail information of Glyur001839s00033725 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT2G38270.1 | 3.00E-21 | CAX-interacting protein 2 |
| NR | XP_007134785.1 | 1.62E-53 | hypothetical protein PHAVU_010G075900g [Phaseolus vulgaris] |
| Swissprot | tr|Q8H7F6|GRS16_ARATH | 7.00E-24 | Monothiol glutaredoxin-S16, chloroplastic (Precursor) |
| trEMBL | tr|V7AMR5|V7AMR5_PHAVU | 6.00E-54 | Uncharacterized protein {ECO:0000313|EMBL:ESW06779.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01839 | 53242 | 55968 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001839s00033725.1 | PF13456.1 | RVT_3 | 174 | 207 | 0.0001 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 27.793 |
| SRR1783600 | control | 27.541 |
| SRR1783602 | moderate drought stress | 21.449 |
| SRR1811619 | moderate drought stress | 21.240 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 14.058 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 14.103 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 5.739 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 5.907 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 12.856 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 12.688 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 23.335 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 21.998 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 6.028 |
| SRR2868004 | Drought Stress (root) | 7.118 |
| SRR2967015 | Control (root) | 6.609 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 14.615 |
| SRR9715740 | Leaf | 18.489 |
| SRR9715741 | Leaf | 21.107 |
| SRR9715739 | Root | 12.818 |
| SRR9715742 | Root | 11.886 |
| SRR9715743 | Root | 12.529 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.938 |
| SRR8749028 | MeJA induced 9h | 2.426 |
| SRR8749029 | MeJA induced 9h | 0.613 |
| SRR8749030 | Uninduced | 0.202 |
| SRR8749031 | Uninduced | 0.102 |
| SRR8749032 | Uninduced | 0.591 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 14.368 |
| SRR8400027 | Control - Root | 14.079 |