Gene detail

Gene detail information of Glyur001837s00030382.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G04620.2	0	biotin F
NR	XP_003527547.1	0	PREDICTED: 5-aminolevulinate synthase, erythroid-specific, mitochondrial-like isoform X1 [Glycine max]
COG	YP_743265.1	3.00E-78	8-amino-7-oxononanoate synthase [Alkalilimnicola ehrlichii MLHE-1]
Swissprot	tr\|Q8RYL1\|LCB2B_ORYSJ	4.00E-28	Long chain base biosynthesis protein 2b
trEMBL	tr\|I1KFQ1\|I1KFQ1_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA06G47430.1}

Sequence

Transcript Sequence

>Glyur001837s00030382.1
CAAGTAGTCAGTGAGCGCAATAAAGTTAAAAGGACGATGTAGCCATTACAATACACATAGCATGTGACGTGAGAATTGAGAAGCCGCCAAAACCCAAAACCAACCACACTCTGTTCCTAACCAATTTGAATTCCTCTTCTCTTCTCTGTGCCAATTCAATTCAATACTACAGAGAAAAGAAAGAACAACAATGGAGGAGACGCCACCAAGTGTGTGGTGGGAGAATTGGGTGGAAGAGGCACTTGCGACCCTTAACTCCCTCAAAGTGCTTCGATCTCTGAGACCCATTTGCCTCCGCAACGAGAGTGTTGACGATGATGCGTTCCAGGTGTTCGATGAAATGCAGAAGTGGGACCGTTCCTCTGTCGAAGTCGAAATTGGTGAATCCACGTTCCGTAGATGGATGCATGACACCCCAAGCTCTGGTGATGAGCTTGTTAATGGTGCAGTTGCTGGTGATGATGAACCGGGGGCATGTAATGAGAAGTTTAAAAAATTAATTTTATTTTCTGGAAATGATTATCTAGGCTTGAGTTCCCACCCAACTATTGGAAGGGCTGCTGCAAAGGTGTCTGGTGAATTTCGAGCAGCTCAAGAACATGGGATGGGACCAAGGGGTTCTGCTCTTATTTGTGGCTATACCAATTATCATAGGCTGCTAGAGTCTAGCTTGGCAGATTTGAAAAAGAAAGAGGATTGCCTTCTTTGTCCCACAGGGTTTGCTGCCAATATGGCCTTGATGACAGCAATAGGAAGTATTGGTTCTCTCTTATCTGGGAATAACACACCTTCAGATGATGAAAAGATTGCTATCTTTTCTGATGCTTTGAACCATGCGTCAATAATTGATGGTATTCGTCTTGCTGAGAGGCAAAAAGGTGTAAAGGTGTACATATATAGACATTGTGATATGTCCCACCTCAATACGCTTCTATCTCGTTGCAGAATGCAGAGGAAAATTGTGGTAACTGACAGCTTGTTTAGCATGGATGGCGACTTTGCACCAATGGCTGCGCTTGCAGAACTCCGGAAGAAGCATGGCTTTTTGTTAGTCCTCGATGATGCTCATGGAACATTTGTTTGTGGCAAAAATGGTGGAGGTGTTGCCGAGGAATTCAACTGTGAGAAGGATGTGGACATATGCATTGGCACACTTAGTAAAGCTGCCGGCTGCCATGGAGGATTTATAGCATGCAGCCGAAGGTGGAAGTTATTAATACAGTCAAGAGGTCGTTCATTTATATTTTCAACTGCTACACCAGTTCCAGTTGCTGCCGCTGCTCATGCTGCTGTTAGAGTGGCAAAACTTGAGACGTGGCGTAGAAAGGCTATTTGGGACCGGGTGAAAGACTTTCATTTGCTTACAGGAGTCCCTGTTACAAGTCCCATTATATCATTAATAGTAGGCAGTGAAGATAAAGCACTGCAAGCAAGCCGGCATTTATTGAAAGCTGGTTTCCATGTGACTGCAATCAGACCACCAACTGTGCCTCCTAACTCATGCAGGCTGCGAGTGGCCCTTAGTGCAGTCCATACAAGGGAAGATTTGGAAAACTTAGCAGCTGCACTCTCCAATTGCATCAATTTTCAAGACACCCGCATATATAACTGCAATAGCTATGCAAGATTGTAG

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01837	9472	15549	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00652	bioF	EC:2.3.1.47	Biotin metabolism	map00780

Gene Ontology

biological_process
GO:0009058 biosynthetic process

molecular_function

GO:0003824 catalytic activity

GO:0030170 pyridoxal phosphate binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001837s00030382.1	PF00155.16	Aminotran_1_2	102	460	6.30E-46

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	5.245
SRR1783600	control	5.388
SRR1783602	moderate drought stress	5.204
SRR1811619	moderate drought stress	5.279

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.568
DRR006520	Root Summer glycyrrhizin high producing strain	5.606
DRR006521	Root Winter glycyrrhizin high producing strain	11.129
DRR006522	Root Winter glycyrrhizin high producing strain	10.584
DRR006523	Root Summer glycyrrhizin low producing strain	4.716
DRR006524	Root Summer glycyrrhizin low producing strain	4.868
DRR006525	Leaf Summer glycyrrhizin high producing strain	7.666
DRR006526	Leaf Summer glycyrrhizin high producing strain	7.530

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	16.285
SRR2868004	Drought Stress (root)	15.501
SRR2967015	Control (root)	13.321

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	6.122
SRR9715740	Leaf	5.502
SRR9715741	Leaf	7.580
SRR9715739	Root	3.448
SRR9715742	Root	6.528
SRR9715743	Root	5.449

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	17.909
SRR8749028	MeJA induced 9h	14.662
SRR8749029	MeJA induced 9h	14.615
SRR8749030	Uninduced	32.638
SRR8749031	Uninduced	24.544
SRR8749032	Uninduced	21.045

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	16.891
SRR8400027	Control - Root	14.890