Gene detail

Gene detail information of Glyur001836s00028587

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G06778.1	1.00E-44	Chaperone DnaJ-domain superfamily protein
NR	XP_004508186.1	4.73E-171	PREDICTED: chaperone protein DnaJ-like [Cicer arietinum]
COG	NP_616413.1	3.00E-13	molecular chaperone DnaJ [Methanosarcina acetivorans C2A]
Swissprot	tr\|Q9FH28\|DNJ49_ARATH	2.00E-17	Chaperone protein dnaJ 49
trEMBL	tr\|K7MJP2\|K7MJP2_SOYBN	1.00E-158	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA17G03280.2}

Sequence

Transcript Sequence

>Glyur001836s00028587.1
TCCAGCCTAACAATATGTTGCTAGTAGGGGGTGTGTGTTTGTTGAAACAAATATGAGGGGACGNTAGAGAATGGCTACAACAACAACATTTAGTTAATCTATTATCTAACATCTAATTATGCAAAAGAAGGTGTTTAGTTAGATTAAAATAAATTAAAGTTCAAATTTAAAAATGAAAAGGAAAAAAAAACGAAAGGGGCAAATGTAACCTCCTAATCCTTCTCAAGAAGTGCCACGTGGAGAGATTAACGNTAACCTCTCTATCTTCTCTCAACTNGTGTGTTCCCACCAACTGATCCAGTGTCAAAAATCTCCTCCGCAAAGCTTGCTCTTTTTTCTTAACCGCTTACACCCCCTCCCCTTCTTTCTGTTTATTACTAACCCTCTGAAAACCAACAAAAAGAAACCACCTTCACTATTTGTAACCCCGTGTTCACGTTTTGTCCTTCACTTCCAAATTCCCATAATCACATTTTACTCTCAAATGGGACAAGAATCAGATTCCAAGGCCAAGTTGGTGTTAGAAATTTGCTCCATTTCCACACGTTCTGCGGCCTGTGTTCACAGACTTGTCTCAAACCCACCCAAGGCGACTTTCATTGACTGGTATTGCATTCTTGGAGTGGAAGAAAATGCAGGGGTAAATGCCATTCGCAAGCGATACCATAAACTGGCCTTGCAACTTCATCCAGATAAGAATAAACATCCAAAGGCTGAAATTGCCTTCAAGCTTGTTTCTGAGGCATATACATGTCTATCTAATGCAGTAAAGAGAAAAGCCTTTGACTTGGAGAGGCATAAGCATTTCTGCTTTGAGTGCAAAAGAATCCCACATGCATCCGGCAATGTTCCTGGGAATTCCAGTGGTTCAGGTTTCAAGGCATGGAATATTATCAGCAGGACAAGATCTTTTAGGCTTTGGAGAAATATTAGGGACATGAGAGAGAGACTTAAGGAGGAGGCTAAGGTGATAGAGAATTGTTTGCGAGTAAATTCTATGTCAAGGAAGGAATCCCCACTCTACGACCCAGTTGATTATCTACAAAGAAGCAAGTCACTGCATAGATTTGAGAAAGAAACCCCTGTTTTCAATCCTTCAGACTATTTGTATCAAGGCTACCCTCATCTGAGAGGCCATGTTTACAAGAATTCTTCGACATTTTGGTACTTGCAGACAACTAGTATGCTTCACAGTGAAAGGAGAGGAGCGCAGTATGCCTCCCCTGTTTTTGAGGTCAAATCAAGAAGTATGTTTACAAGCAAATTTGCTTTTGTCCCATCATGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01836	38710	40338	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001836s00028587.1	PF00226.26	DnaJ	40	101	1.00E-20

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.989
SRR1783600	control	3.978
SRR1783602	moderate drought stress	3.639
SRR1811619	moderate drought stress	3.573

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	5.676
DRR006520	Root Summer glycyrrhizin high producing strain	5.615
DRR006521	Root Winter glycyrrhizin high producing strain	0.086
DRR006522	Root Winter glycyrrhizin high producing strain	0.084
DRR006523	Root Summer glycyrrhizin low producing strain	0.900
DRR006524	Root Summer glycyrrhizin low producing strain	0.889
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.979
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.008

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	4.591
SRR2868004	Drought Stress (root)	2.420
SRR2967015	Control (root)	2.134

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	1.098
SRR9715740	Leaf	0.432
SRR9715741	Leaf	0.406
SRR9715739	Root	0.675
SRR9715742	Root	0.862
SRR9715743	Root	0.917

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	1.875
SRR8749028	MeJA induced 9h	0.399
SRR8749029	MeJA induced 9h	0.829
SRR8749030	Uninduced	0.174
SRR8749031	Uninduced	0.817
SRR8749032	Uninduced	0.169

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	11.143
SRR8400027	Control - Root	10.785