Gene detail

Gene detail information of Glyur001836s00028582

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G06770.2	5.00E-148	Pectin lyase-like superfamily protein
NR	XP_003550546.2	0	PREDICTED: probable polygalacturonase-like [Glycine max]
COG	YP_001179193.1	1.00E-45	galacturan 1,4-alpha-galacturonidase [Caldicellulosiruptor saccharolyticus DSM 8903]
Swissprot	tr\|A7PZL3\|PGLR_VITVI	1.00E-125	Probable polygalacturonase
trEMBL	tr\|I1MRM1\|I1MRM1_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA17G03300.1}

Sequence

Transcript Sequence

>Glyur001836s00028582.1
ATTCTCTCTCTCTCTATCTCTCTCTCTCAGCCCCTGCAATTTTTTCCTTTTTTGGTTCTTTCTTGGTGCTTGGGCACTACTTAGTTCTGCCTCTTGTATCTTCTGCTCCCCTTTTGTCAGAGGCTTTGACCAAAGAACATGCTAGTGGCATTGTTGTTGCTGGTGGCGTTGAGCAATGACGTGAGAGTGAATGGTGAAGGTGGTGGAGGAAGCAGGCAATGTGAGTTGAATCCGGCACTAAAACCAAGACCACACAGTGTCTCCATTTTGGAGTTTGGTGCTGTTGGGGATGGTAAAACGTTGAACACTATTGCATTCCAGAATGCCATCTTCTATCTCAAGTCATTTGCTGATAAAGGTGGTGCTCAGCTATATGTGCCACCCGGAACATGGCTCACTCAAAGTTTCAATCTTACTAGCCATCTTACCCTCTTTTTAGAAAAAGGTGCTGATCCATATCATTGGGAAGTTGTTGATCCCTTACCTTCTTATGGCCGAGGAATTGAAGTTCCTGGGGGAAGATATCAGAGCTTGATAAATGGATACAAGTTACATGATGTGGTCATAACAGGTAATAATGGAACCATTGATGGCATGGGATTGGCTTGGTGGGAGTCATTTAGCTCTCACTCCCTGAACTACAGCCGTCCTCATCTGGTTGAATTAGTGGCATCCAATGATGTGGTAGTTTCAAATCTTTCATTCTTGAACGCCCCTGCATATAGCATCCACCCAGTTTATTGCAGGCATGTTCTGTTCTGTGCTGCTTCTAAACATTACTCAAATCATACCAATGTACATATTCATAACATCTCAATCTTTGCTCCTCCAGAATCCCCTTATACTGTTGGCTTAGATTGTGTCATTGCCACTGGCTATGATGCAATTGCCCTCAAAAGTGGCTGGGACGAGTATGGCATTGCCTACGGCCGGCCGACCGAGAATGTGCACATCAGAAGGGTACAACTGCAGGCTTCTTCCGGCTCTACTATTGCATTTGGCAGTGACATGTCTGGTGGCATTTCAAAAGTTGTTGTGGAGCATGTCCATCTCCACAACTCAAATGGTGGCATTGAGTTCAGAACCACAAGGGGCAGAGGTGGTTATATGAAGGAAATCATCATATCAGACATAGAAATGAAGAATATCTACACAGCAATTGCTGCCACAGGTTATTGTGGGTCTCATCCTGATGACAAATTTGATCCTAATGCTCTCCCACTTTTGGATCACTTCATTTTGCAAGATATGATAGGCACAAACATCACTATTGCTGGAAGTTTTGCTGGACTACAAGAATCTCCTTTCACTAACATATGCCTTTCCAACATAACCTTGTATACAAATTCTGCTTCCTCCATTACTTGGGAATGCTCAAATGTCTCTGGATTTTCAGATTCTGTTCTTCCTAAACCCTGTCCTGATCTTGAGAACACTTCAGATTCTTCCTCATTCTGTCTCTCCATGTTGGGTGTCAATGGAAAAAGTGCATCCCTGTGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01836	9297	12173	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

Not hits found.

Not hits found.

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001836s00028582.1	PF12708.2	Pectate_lyase_3	41	313	5.90E-18

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.402
SRR1783600	control	3.434
SRR1783602	moderate drought stress	3.357
SRR1811619	moderate drought stress	3.496

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	4.784
DRR006520	Root Summer glycyrrhizin high producing strain	4.769
DRR006521	Root Winter glycyrrhizin high producing strain	4.218
DRR006522	Root Winter glycyrrhizin high producing strain	4.300
DRR006523	Root Summer glycyrrhizin low producing strain	5.699
DRR006524	Root Summer glycyrrhizin low producing strain	5.844
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.071
DRR006526	Leaf Summer glycyrrhizin high producing strain	2.917

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	16.169
SRR2868004	Drought Stress (root)	10.855
SRR2967015	Control (root)	12.116

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	4.460
SRR9715740	Leaf	3.120
SRR9715741	Leaf	2.227
SRR9715739	Root	1.988
SRR9715742	Root	3.249
SRR9715743	Root	2.683

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	2.700
SRR8749028	MeJA induced 9h	4.846
SRR8749029	MeJA induced 9h	1.964
SRR8749030	Uninduced	3.379
SRR8749031	Uninduced	2.248
SRR8749032	Uninduced	1.536

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	7.591
SRR8400027	Control - Root	11.290