Gene detail information of Glyur001836s00028581 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G11240.1 | 0 | transducin family protein / WD-40 repeat family protein |
| NR | XP_004508181.1 | 0 | PREDICTED: WD repeat-containing protein 43-like [Cicer arietinum] |
| COG | YP_628425.1 | 3.00E-13 | hypothetical protein MXAN_0142 [Myxococcus xanthus DK 1622] |
| Swissprot | tr|Q8H0T9|KTNB1_ARATH | 5.00E-06 | Katanin p80 WD40 repeat-containing subunit B1 homolog {ECO:0000255|HAMAP-Rule:MF_03022} |
| trEMBL | tr|K7L3M1|K7L3M1_SOYBN | 0 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA07G37311.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01836 | 954 | 7775 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001836s00028581.1 | PF00400.27 | WD40 | 116 | 149 | 0.037 |
| Glyur001836s00028581.1 | PF00400.27 | WD40 | 154 | 182 | 0.0068 |
| Glyur001836s00028581.1 | PF00400.27 | WD40 | 194 | 222 | 0.00035 |
| Glyur001836s00028581.1 | PF04003.7 | Utp12 | 486 | 581 | 1.20E-13 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 5.828 |
| SRR1783600 | control | 5.831 |
| SRR1783602 | moderate drought stress | 5.628 |
| SRR1811619 | moderate drought stress | 5.577 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 11.031 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 10.490 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 7.654 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 7.573 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 8.311 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 8.206 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 4.524 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 4.311 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 14.709 |
| SRR2868004 | Drought Stress (root) | 10.705 |
| SRR2967015 | Control (root) | 10.017 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 6.839 |
| SRR9715740 | Leaf | 9.602 |
| SRR9715741 | Leaf | 8.463 |
| SRR9715739 | Root | 2.098 |
| SRR9715742 | Root | 8.690 |
| SRR9715743 | Root | 7.799 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 20.975 |
| SRR8749028 | MeJA induced 9h | 14.747 |
| SRR8749029 | MeJA induced 9h | 11.306 |
| SRR8749030 | Uninduced | 4.118 |
| SRR8749031 | Uninduced | 1.005 |
| SRR8749032 | Uninduced | 1.697 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 10.053 |
| SRR8400027 | Control - Root | 9.165 |