Gene detail information of Glyur001835s00040212 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| NR | XP_006588029.1 | 3.71E-134 | PREDICTED: uncharacterized protein LOC100776307 [Glycine max] |
| trEMBL | tr|G0Y6U4|G0Y6U4_ARAHY | 1.00E-93 | Retrotransposon gag protein {ECO:0000313|EMBL:AEL30354.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01835 | 23982 | 27150 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001835s00040212.1 | PF03732.12 | Retrotrans_gag | 116 | 209 | 2.70E-18 |
| Glyur001835s00040212.1 | PF13975.1 | gag-asp_proteas | 640 | 687 | 6.20E-08 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.071 |
| SRR1783600 | control | 0.102 |
| SRR1783602 | moderate drought stress | 0.205 |
| SRR1811619 | moderate drought stress | 0.206 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.244 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 1.115 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.266 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.997 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.104 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.142 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.145 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.113 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 0.799 |
| SRR2868004 | Drought Stress (root) | 0.872 |
| SRR2967015 | Control (root) | 0.905 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.001 |
| SRR9715740 | Leaf | 0.063 |
| SRR9715741 | Leaf | 0.002 |
| SRR9715739 | Root | 0.078 |
| SRR9715742 | Root | 0.000 |
| SRR9715743 | Root | 0.022 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 4.491 |
| SRR8749028 | MeJA induced 9h | 5.840 |
| SRR8749029 | MeJA induced 9h | 3.519 |
| SRR8749030 | Uninduced | 7.734 |
| SRR8749031 | Uninduced | 13.594 |
| SRR8749032 | Uninduced | 9.808 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.040 |
| SRR8400027 | Control - Root | 0.108 |