Gene detail

Gene detail information of Glyur001830s00040096.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT3G09230.1	6.00E-75	myb domain protein 1
NR	AHB59593.1	0	putative R2R3 MYB protein 5 [Arachis hypogaea]
Swissprot	tr\|Q9FDW1\|MYB44_ARATH	8.00E-41	Transcription factor MYB44
trEMBL	tr\|V5T701\|V5T701_ARAHY	0	Putative R2R3 MYB protein 5 {ECO:0000313\|EMBL:AHB59593.1}

Sequence

Transcript Sequence

>Glyur001830s00040096.1
ATGGAACCGGAAGAAGAAGCCGCCGCCGCTGCCACCGCCGAGGACCCCGAAGGAAGCGGCGATGAGGGATTGGTTGGAGTANGCGAAGGTGGCGGCGGCAGGGACAGGGTGAAGGGTCCGTGGTCACCGGAAGAGGACGCCATTCTGAGCCGGCTGGTGAGCAAGTTTGGCGCCAGAAATTGGAGCCTCATCGCTCGCGGGATCGCCGGAAGATCCGGNAAGTCGTGCCGTCTCCGGTGGTGCAATCAGCTCGACCCTGCTGACCGGATCATAGTTGCTGCTCATGCAATCCATGGAAACAAATGGGCCGCCATTGCCAGGCTTCTACCGGGAAGAACAGATAATGCAATTAAGAACCACTGGAATTCTACTTTGAGGCGTCGGGGAGTTGAACATGACAAGATTAAGCTAGAATCTGGTAACATAGGGGAAGATATTAGCTTCGACAAAGCCAAAGCATCATCAGAAGAGACACTATCATGTGGAGATGTTAATTCCTTGAAATCCTCAGAAGGAAGAGACGTTAGTTCTATGGAGATCGTGGACGATAAATATGAAGACAAAGCGCGAACTGAGGGTCAATTATACCATGAAGTCAGGGATCCGCCCACCCTTTTTCGGCCTGTAGCACGCGTAAGTGCTTTTAGTGTATATAACTCTTTCAATGGTTTACAGCCTTCAACATCATCAATTCAAAGACCTNTTCCAATGCAAGGACCCATTTTGCAATCGTCAAAACCAGATATCGATTTCTGTAAAATGCTCGAAGGAACTTACAGTGACCGGTCAGTGCCCTACCAGTGTGGCCATGGATGCTGTTCTGCTCCGAATGACAACAACTTGAAAAGCTCTTTGTTGGGACCAGAATTCATTGAATTTTCAGAACCCCCATCTTTCCCAAGTTTTGAGTTGGCTGCAATAGCTACAGACATTAGTAACCTTGCTTGGCTCAAAAGTGGATTGGAGAATAGTAGTGTCAAAATGATGGGTGACACTGCTGGCAGGGTAGTTTCCGATCTCTCGCAT

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01830	5050	21800	+

Gene family

Gene family	subfamily
Transcription Factors Family	MYB

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0003677 DNA binding

GO:0003682 chromatin binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001830s00040096.1	PF00249.26	Myb_DNA-binding	38	83	1.90E-14
Glyur001830s00040096.1	PF00249.26	Myb_DNA-binding	88	124	2.60E-11

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	12.526
SRR1783600	control	12.796
SRR1783602	moderate drought stress	14.349
SRR1811619	moderate drought stress	14.315

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	10.563
DRR006520	Root Summer glycyrrhizin high producing strain	11.193
DRR006521	Root Winter glycyrrhizin high producing strain	17.104
DRR006522	Root Winter glycyrrhizin high producing strain	16.652
DRR006523	Root Summer glycyrrhizin low producing strain	11.165
DRR006524	Root Summer glycyrrhizin low producing strain	11.162
DRR006525	Leaf Summer glycyrrhizin high producing strain	4.098
DRR006526	Leaf Summer glycyrrhizin high producing strain	4.147

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	10.808
SRR2868004	Drought Stress (root)	12.215
SRR2967015	Control (root)	12.889

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	4.598
SRR9715740	Leaf	4.262
SRR9715741	Leaf	6.069
SRR9715739	Root	5.713
SRR9715742	Root	12.935
SRR9715743	Root	9.441

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	15.908
SRR8749028	MeJA induced 9h	16.295
SRR8749029	MeJA induced 9h	4.995
SRR8749030	Uninduced	3.096
SRR8749031	Uninduced	0.785
SRR8749032	Uninduced	1.729

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	14.884
SRR8400027	Control - Root	14.579