Gene detail

Gene detail information of Glyur001829s00033199

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G62190.1	0	DEAD box RNA helicase (PRH75)
NR	XP_003536498.1	0	PREDICTED: DEAD-box ATP-dependent RNA helicase 7-like [Glycine max]
COG	YP_004056955.1	1.00E-87	ATP-dependent RNA helicase dbpa [Oceanithermus profundus DSM 14977]
Swissprot	tr\|Q41382\|RH7_SPIOL	0	DEAD-box ATP-dependent RNA helicase 7
trEMBL	tr\|I1LDY0\|I1LDY0_SOYBN	0	Uncharacterized protein {ECO:0000313\|EnsemblPlants:GLYMA10G38680.1}

Sequence

Transcript Sequence

>Glyur001829s00033199.1
AAAAAAGTAAACATTGAAAACATAAAAGACATTTAATTCTTTCTCAATTAAGTAAATAGAAGGGTTTGTAGGAATAAAAGGTAGGAGAATATATAATTATTCTAAAAAAAATCGATGAAAAGAAATCAAGACTTTATTATAATAAAAAAAAAAAAAGACAGTTGTACGGAATTGAGCCGCAGGAACGGAGAGGTGGGAACACCGACAAAAAGGTTGTTATAAATACTCGTTAATTAATTAATTGAAATTTGAAAGGTGAGAGATGGATAGTCTATTAGTCTAGAATAGAATCCAACGGTTAGGGAAAACAAAAACGAGAATAGGGTTTAAGAAAAGGGGGGAAAGAATGTTTCCACCGCGAAAGCCATATTACCGGAAACTTCGACGCTGCTGACTCCTCTTTCTTCTCTTGCTTCTGCAACTCATCACAGTCACTGCCATAACCCCTCCTTCCAAGCAGGAGAAAATCTCTCTCTCTCTCTCTCCATTTTTTCTCTCTCTTCCAACGCCGTCATGCCTTCTCTCCCTCTTTCTGATACTGAATCAACCCCCAAACCCAAACATAAGAAAGACAAGACAAAAAAGACCAAGGAACAATCCCAAACCGAACCCGAAGGTTCCACCACCGGCAAGAAGAGCAAGAAAAGCTCCAAACTTGTTGCCACTGACCTGAACCCCTCTGTTCCCGACGAAGATGGGGTTTCGGGGAAGAAGGAGAACAAGAAGAAGCGCAAGGCTTCACATTTAGACGCGATGACGACGACGACGACGACGGCCAATGGGTACGAGGAGAATAGTTCCGAGCTGGTCGATCACGAAGGTTCAAGAGAGGATAAGGAAAAGAAGGAGAAGAAAAAGAAGAAGAAGAAAGCCAAGTTGGAGGAACCTCCATTAATGGAAGAAGAACAAGAAAAAGAGAAAGAGGAAGAGGTTGAGGAGAAGGAGGATCCCAATGCGGTTTCGAAATTCAGGATATCGGAGCCGTTGAGGGAAAAGTTGAAGGAGAAGGGAATCGAGTCGCTGTTTCCCATTCAGTCCATGACATTCGATACCATTCTCGATGGTTCTGATTTGGTTGGTCGGGCTCGCACTGGTCAGGGTAAAACTCTGGCCTTTGTGCTGCCCATATTAGAGTCTTTAACAAATGGTCCAGCAAAGGCATCAAGAAAGACTGGCTACGGGAGGCCTCCTAGCGTTCTTGTGCTTTTACCTACTAGGGAATTGGCCTGTCAGGTGCAAGCTGATTTTGAAGTTTATGGTGGGGCAATGGGATTGACTTCCTGTTGTTTATATGGTGGAGCTCCATATCAAGGTCAAGAAATTAAGCTCAAGAGAGGTGTGGATGTTGTTGTTGGCACACCAGGTCGCATAAAGGATCATATTGAGAGGGAAAATATTGACCTGAGCCAACTAAAGTTTCGTGTCCTTGATGAAGCAGANGAGATGCTGAGGATGGGTTTTGTTGAAGATGTTGAACTGATTCTTGGTAAGGTAGAAAATGTTGGTAAAGTTCAGACACTTCTTTTCAGTGCTACCTTGCCAGACTGGGTTAAGCAGATTGCTGCAAGATTTCTGAAGTCAGATAAGAAAACTGCTGACCTTGTTGGAAATACAAAAATGAAGGCTAGTATCAATGTTAGGCATATTGTTCTTCCTTGTACTAGTTCTGCCAGGTCCCAGCTTATCCCGGACATCATTCGCTGTTATAGCAGTGGAGGCCGAACAATTATTTTCACTGAGACAAAGGAATCGGCATCTCAGCTTGCAGGTTTGTTGCCTGGAGCAAGAGCTCTCCATGGTGACATACAGCAGTCACAACGTGAGGTTACTTTGTCTGGCTTCAGGTCTGGCAAATTCATGACATTAGTTGCCACAAATGTGGCAGCTCGAGGTCTGGACATTAATGATGTTCANTTAATTATTCAGTGTGAACCCCCAAGGGATGTAGAAGCCTATATCCATCGTTCTGGGCGCACAGGAAGAGCAGGCAACACTGGAGTTGCTGTTATGCTTTATGATCCAAGGAGGTCAAGTGTATCTAAAATAGAGAGAGAGTCGGGTGTAAAATTTGAACATGTATCTGCCCCTCAGCCTGATGATATTGCCAAAGCTGTTGGTGGGGAAGCTGCGGAAATGATTACCCAAGTGTCTGATAGTGTGATTCCTGCATTCAAGTCTGCTGCTGAGGAGCTTTTGAATAACTCTGGTTTATCCGTAGTTGAATTACTTGCAAAGGCTCTTGCCAAGGCTGTTGGTTACACCGAGATCAAGAAAAGATCACTTCTCACTTCTATGGAGAACTATGTTACATTACTTCTCGAGAGTGGGAAACCTATCTTTACCCCATCTTTTGCATACAGAATCTTGAGGAGATTCTTGCCTGAAGAGAAGGTTGAGGCTGTGAAAGGTCTTGCTCTCACTGCGGATGGAAGTGGTGTTGTTTTTGATGTACCAGCTGAAGATTTAGATACATATCTTACTGGTCAGAAGAATGCCTCAGATATAAGTTTAGAGGTGTTAAAAGCATTGCCGCGTTTACAGCAGAAAGATCAATCAAGAGGGGGAAGATTTGGTGATGGTGGTGGTCGCGGTGGGTTTGGTCGGGGGAACAGGTTTTCAGGGGGGAGAGGTGGTGGCAGGAATGGTAGATTTTCAGCCGATAGGTTTTCCAACGGCAGTGGGAGAGATCGTGGCAACTGGGGTGGGAAGAGATGGTGAAGCTGACAGTGGGTTGAGTGCAGAATACATGGACTTCAAGTGATCGATCACTTTGTTCAATATACATGAGCATGACTGCATGAGGTTTCCTTGGAGAGACGTGAAGAAGACCTACTTCAGGTGTGAGTGATGTTGGTTCATAGGATGTGAGCTTAACTGCATGAGGGTGCCTTAGAGATAGATGCTTTGGTTCTGACTGAGGAATATTTGATGTTGGTTCACTGGCTTTGGAGGATNCCAGTTCAGAGGGGCTCAAACCCAATGTGTCCCCAATCCATTAACAAAATTTGTTTTAGGTTTAGTATTCTTTGAAAAGAAAGGTACATTACTTTTTTTTTTTGCTTTGTTATTGATACCGCTTTCTTTTAGTCCCCAATTCCGGCCAGAGAGATGGCTTGGTGAAAATGGAATTTTCCAGAAACAAAGCCCTTTGAATCTCACAGCCTTCCAGGTAGGAAGCATTTTAGTTTTGTTTGTATGCATTAGACTAAAATTAACAGCAAGACAGCAGCAATATTTCATTCCAGAACANTTAGTCTTACAGACAGATGAAGATATTTTCTGCAGTCCTGTCCTGTTAGGTAGCCACAGCTTCAAACTTGCAGACCAAAGTAAATTAGTGAAATATAGAACCATGCTCACCCTACAAATTGATGGTGGACTGC

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01829	38940	49804	+

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

cellular_component
GO:0005634 nucleus

molecular_function

GO:0003676 nucleic acid binding

GO:0003723 RNA binding

GO:0004386 helicase activity

GO:0005524 ATP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001829s00033199.1	PF00270.24	DEAD	172	348	3.70E-41
Glyur001829s00033199.1	PF00271.26	Helicase_C	426	492	4.90E-22
Glyur001829s00033199.1	PF08152.7	GUCT	581	677	2.20E-33

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	2.839
SRR1783600	control	2.818
SRR1783602	moderate drought stress	2.557
SRR1811619	moderate drought stress	2.501

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	3.871
DRR006520	Root Summer glycyrrhizin high producing strain	3.784
DRR006521	Root Winter glycyrrhizin high producing strain	2.193
DRR006522	Root Winter glycyrrhizin high producing strain	2.022
DRR006523	Root Summer glycyrrhizin low producing strain	5.708
DRR006524	Root Summer glycyrrhizin low producing strain	5.791
DRR006525	Leaf Summer glycyrrhizin high producing strain	3.452
DRR006526	Leaf Summer glycyrrhizin high producing strain	3.428

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	6.612
SRR2868004	Drought Stress (root)	4.939
SRR2967015	Control (root)	4.786

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	3.082
SRR9715740	Leaf	3.935
SRR9715741	Leaf	2.399
SRR9715739	Root	0.803
SRR9715742	Root	3.697
SRR9715743	Root	2.879

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	0.210
SRR8749028	MeJA induced 9h	0.079
SRR8749029	MeJA induced 9h	0.223
SRR8749030	Uninduced	0.088
SRR8749031	Uninduced	0.022
SRR8749032	Uninduced	0.016

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	6.618
SRR8400027	Control - Root	6.003