Gene detail information of Glyur001828s00042969 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT5G52960.1 | 2.00E-45 | |
| NR | AFK39817.1 | 4.66E-71 | unknown [Lotus japonicus] |
| trEMBL | tr|I3SHS5|I3SHS5_LOTJA | 2.00E-71 | Uncharacterized protein {ECO:0000313|EMBL:AFK39817.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01828 | 2922 | 7222 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001828s00042969.1 | PF11341.3 | DUF3143 | 106 | 172 | 4.60E-24 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 24.423 |
| SRR1783600 | control | 24.895 |
| SRR1783602 | moderate drought stress | 10.717 |
| SRR1811619 | moderate drought stress | 10.370 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 15.487 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 15.289 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 5.105 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 5.146 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 13.809 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 12.608 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 27.964 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 27.724 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 5.984 |
| SRR2868004 | Drought Stress (root) | 5.785 |
| SRR2967015 | Control (root) | 5.375 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 24.247 |
| SRR9715740 | Leaf | 26.705 |
| SRR9715741 | Leaf | 19.187 |
| SRR9715739 | Root | 5.818 |
| SRR9715742 | Root | 8.391 |
| SRR9715743 | Root | 9.803 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 19.790 |
| SRR8749028 | MeJA induced 9h | 9.853 |
| SRR8749029 | MeJA induced 9h | 10.129 |
| SRR8749030 | Uninduced | 2.018 |
| SRR8749031 | Uninduced | 0.434 |
| SRR8749032 | Uninduced | 0.804 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 17.722 |
| SRR8400027 | Control - Root | 15.532 |