Gene detail information of Glyur001827s00038942.1 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT1G80580.1 | 1.00E-18 | Integrase-type DNA-binding superfamily protein |
| NR | AES86505.2 | 6.58E-52 | AP2 domain class transcription factor [Medicago truncatula] |
| Swissprot | tr|Q9M8M5|ERF84_ARATH | 1.00E-24 | Ethylene-responsive transcription factor ERF084 |
| trEMBL | tr|G7JFP6|G7JFP6_MEDTR | 2.00E-52 | AP2 domain class transcription factor {ECO:0000313|EMBL:AES86505.2} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01827 | 44635 | 45294 | + |
Gene family
| Gene family | subfamily |
|---|---|
| Transcription Factors Family | ERF |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001827s00038942.1 | PF00847.15 | AP2 | 90 | 119 | 6.20E-06 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.093 |
| SRR1783600 | control | 0.091 |
| SRR1783602 | moderate drought stress | 0.124 |
| SRR1811619 | moderate drought stress | 0.073 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.280 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.176 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.748 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.880 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.167 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 0.303 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 1.245 |
| SRR2868004 | Drought Stress (root) | 1.395 |
| SRR2967015 | Control (root) | 1.492 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 1.141 |
| SRR9715740 | Leaf | 1.302 |
| SRR9715741 | Leaf | 0.767 |
| SRR9715739 | Root | 0.911 |
| SRR9715742 | Root | 1.116 |
| SRR9715743 | Root | 1.069 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 1.217 |
| SRR8749028 | MeJA induced 9h | 0.446 |
| SRR8749029 | MeJA induced 9h | 0.026 |
| SRR8749030 | Uninduced | 2.419 |
| SRR8749031 | Uninduced | 0.085 |
| SRR8749032 | Uninduced | 0.078 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 0.314 |
| SRR8400027 | Control - Root | 0.305 |