Gene detail

Gene detail information of Glyur001825s00027400.1

Functional Annotation

Database	Orthologs	Annotation
TAIR	AT1G79750.1	NADP-malic enzyme 4
NR	XP_004510309.1	PREDICTED: NADP-dependent malic enzyme 4, chloroplastic-like [Cicer arietinum]
COG	YP_007218386.1	NAD-dependent malic enzyme [Thioalkalivibrio nitratireducens DSM 14787]
Swissprot	tr\|P36444\|MAOC_FLAPR	NADP-dependent malic enzyme, chloroplastic (Precursor)
trEMBL	tr\|I1KV22\|I1KV22_SOYBN	Malic enzyme {ECO:0000256\|RuleBase:RU003426}

Sequence

Transcript Sequence

>Glyur001825s00027400.1
AGCTGTCTCTGAAAAACAGGTGAAGAAGGGAGAGGGGAAGACAGAGAGAGACTGAGAGAGAGAGAGAAGAGAGAAGAAAAAGAGGAGAAAAGTAAGGGAAGGGANACTTCTCCTAAAGACTCTCTCATTTTCGCTCTTTCTTCCACTCTTGTCTTAATTCTGTCCCTCGTTTCTTTCTCTCTCCCTCTGCTTCACACAACAACCGCAACTCTCTCTCAATCGAACATTTGTTACCCCCTCATCATGATCTCCTCCAAAACATGCACCTTCCTGTGCAACTCAGGCATAGGTGGGTGGTCATCTTGCAGCAACTTCTCTGGTTCGCAGAGAAAGCCTTCTGCTTCTTCGAGGGTGGCGTGTTTATCTCGTGACAGACCCTTCAGNAGCGTTGTGATGGAGTCACCGTTGAAAGAGACAAGCGACGGTTCCACGGTGGCCGACGTCGACGACTGCCCCACCTCCGCCGGCGGCGTAAGGGACGTCTACGGCGAGGACAGGGCCACGGAGGATCAGCTTCTTACTCCCTGGAGTGTCTCTATTGCTAGTGGCTATACTTTGTTGAGAGATCCACACTTCAATAAAGGATTAGCCTTCACTGAACAAGAGAGGGACGCACACTACTTGCGTGGTCTTCTTCCCCCAACAGTTATTTCTCAAGACACTCAGGTGAAGAAATTGATCCAACACATACGACAATATCAAGTTCCATTGCAAAAGTACATGGCAATGATGGATCTTCAGGAGAGAAACGAAAGGCTGTTTTATAAGCTTCTAATTGATCATGTTGAGGAGTTACTCCCAGTTGTTTATACTCCAACTGTTGGTGAAGCTTGCCAGAAATATGGGACCATCTTCATGCATCCCCAAGGTCTTTATATAAGTTTGAAAGAGAAAGGGAGGATTCTTGAAGTACTTAGGAATTGGCCCGAGAAGAACATTCAAGTCATTGTTGTAACTGACGGAGAGCGGATCTTGGGTCTTGGGGATCTTGGCTGTCAAGGGATGGGAATACCAGTGGGAAAACTTGCTTTATACACGGCACTTGGTGGAGTTCGCCCTTCTTCTTGCTTGCCTATTACCATTGATGTGGGTACAAACAATGAGAAGCTGTTGAATGACGAATTATATATAGGGCTAAAACATAGGCGAGCAACTGGGCAGGAATATAGTGAACTTCTTCATGAATTTATGATCGCAGCCAAGCAAAATTATGGAGAAAAAGTCCTCATCCAGTTTGAAGACTTTGCAAACCACAATGCTTTTGATCTACTTGAAAAGTATAGGTCGACACATCTTGTTTTTAATGATGATATCCAGGGAACTGCGTCAGTGGTCCTTGCTGGTCTAGTTTCAGCTCTGAAATTGGTTGGGGGAAGCTTAGCCGACCATAGGTTCCTATTCCTTGGAGCTGGAGAGGCTGGCACTGGAATAGCAGAACTCATAGCACTTGAAGTATCAAAACGGACAAATGCCCCGCTGGATGAAATGCGCAAAAACATTTGGTTGGTGGACTCGAAGGGTTTGATTGTCAGTTCTCGTAAAGAATCACTCCAGCATTTTAAGAAGCCTTGGGCTCATGAACATGAACCTGTTAAGGAACTTGTAGATGCTATTAAACAAATTAAGCCAACGGTTTTGATTGGAACATCAGGACAAGGGAGAACTTTTACTCAAGAAGTGGTTGAGGCTATGGCCTCCATTAATGAGAAACCTATCATTCTTGCCCTTTCCAACCCGACATCACAGTCAGAATGTACTGCTGAACAAGCCTATACATGGAGCCAGGGACGTGCCATTTTTGCTAGCGGTAGCCCATTTGCCCCAGTTGAATATGATGGAAAAGTATTTGTGCCTGGCCAGGCCAATAATGCATACATTTTCCCTGGATTTGGTCTTGGGTTAATAATGTCTGGATCCATCCGAGTACATGATGACCTGCTTCTAGCTGCTTCTGAGGCTTTGGCTTCACAGGTGACACAGGAGGATTATGACAGGGGGCTTATATACCCACCATTCACTAACATCAGAAAGATTTCAGCACACATAGCTGCCAAGGTGGCTGCTAAGGCCTATGAGCTTGGCTTGGCCACTCGCCTTCCTCAACCAAAAGATTTGGTGAAGTTTGCTGAGAGTTATTACGACAAATACAATAGAATATGA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01825	48846	54854	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
K00029	E1.1.1.40, maeB	EC:1.1.1.40	Carbon metabolism	map01200
			Pyruvate metabolism	map00620
			Carbon fixation in photosynthetic organisms	map00710

Gene Ontology

biological_process

GO:0006108 malate metabolic process

GO:0055114 oxidation-reduction process

molecular_function

GO:0004470 malic enzyme activity

GO:0004471 malate dehydrogenase (decarboxylating) (NAD+) activity

GO:0051287 NAD binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001825s00027400.1	PF00390.14	malic	166	347	2.30E-78
Glyur001825s00027400.1	PF03949.10	Malic_M	357	610	4.40E-91

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	67.055
SRR1783600	control	67.410
SRR1783602	moderate drought stress	98.445
SRR1811619	moderate drought stress	98.309

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	38.882
DRR006520	Root Summer glycyrrhizin high producing strain	38.234
DRR006521	Root Winter glycyrrhizin high producing strain	35.947
DRR006522	Root Winter glycyrrhizin high producing strain	34.633
DRR006523	Root Summer glycyrrhizin low producing strain	59.214
DRR006524	Root Summer glycyrrhizin low producing strain	59.611
DRR006525	Leaf Summer glycyrrhizin high producing strain	10.708
DRR006526	Leaf Summer glycyrrhizin high producing strain	10.690

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	77.284
SRR2868004	Drought Stress (root)	123.475
SRR2967015	Control (root)	132.338

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	36.112
SRR9715740	Leaf	34.547
SRR9715741	Leaf	65.618
SRR9715739	Root	56.696
SRR9715742	Root	72.356
SRR9715743	Root	61.277

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	35.995
SRR8749028	MeJA induced 9h	75.454
SRR8749029	MeJA induced 9h	24.743
SRR8749030	Uninduced	91.101
SRR8749031	Uninduced	99.204
SRR8749032	Uninduced	39.641

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	117.568
SRR8400027	Control - Root	97.069