Gene detail

Gene detail information of Glyur001825s00027393

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT1G51940.1	0	protein kinase family protein / peptidoglycan-binding LysM domain-containing protein
NR	BAI79272.1	0	LysM type receptor kinase [Lotus japonicus]
COG	YP_003270695.1	8.00E-26	serine/threonine protein kinase [Haliangium ochraceum DSM 14365]
Swissprot	tr\|F4IB81\|LYK3_ARATH	0	LysM domain receptor-like kinase 3 (Precursor)
trEMBL	tr\|D3KTZ5\|D3KTZ5_LOTJA	0	LysM type receptor kinase {ECO:0000313\|EMBL:BAI79272.1}

Sequence

Transcript Sequence

>Glyur001825s00027393.1
ATGATTCTTGTACGAAAACCCCACTTGAAGTTGCTTCACTTTCTTCTCTTCCTTCTTTCCCTTCACTGCAAAATCACCACCTCTTACACGATGGCACCAATGAACTGTACGGACACAACCCGTGTGTGCACCTCTTTCATGGCCTTTAAGCCTCAACAAAACCAGACACTGGCGGTGATACAAAGCATGTTTGATGTGTTGCCCAGTGACATCACAGTTGAAGGCAATGGTTGGGATTACTTATTCATAAGGAAGAACTGTTCCTGTGCAGCTGGGATCATGAAGTATGTGTCTAACACCACTTTCACTGTGAAATCCAGTGATGGGATGGTGTATGATCTGGTGGTGGATGCCTATGATGGGCTTGCTATCCTTCCCAACACCACAAGGAGGGCAAGGAATGGTGCTGTTGTGTCAGTGAGGTTGTTCTGTGGCTGCTCCAGTGGACTTTGGAACTATCTGATGAGTTATGTCATGAGAGATGGGGACAGTGTTGAATCCTTGGCTAGCAGATTTGGGGTTAGTATGGATAGCATTGAGGCTGTGAATGGACTAGATGGTCCTGATAATGTCACTGTGGGTTCACTTTATTATATACCTCTTGATTCTGTTCCTGGTGATCCTTATCCCTTGAACAATGCTTCCCCACCAGTTCCTGTTCCTGTTCCTGCCCCATCTGTTGATAATTTTTCAGGTGATCAAGTCAATCATAAGGCTAATGTACCCTATGGATGGATCGTTGGGGGTTTAGGAGTTGGTCTTATTATGATGATATTAGGCATAATTCTCTGTGTTTGCCTGAGATCATCAAATTGTTTTGCTGAAGGAAGAAGTCATGAAAAAGATGCTGAGGGAAAGGTCTCTCATAAATTCCATATTCTTCGGAACCCAAGTTTTTTTTGTGGTTCTGGAAGGTACATATGTGGCAAACATGTTGACCAGAAGCAAACAGATGGTGATTCCAGCAATCACACAGTTACCATTCCCAAAGCTTCAACTCTCGGGCCTGATGTATTTGACATGGATAAGCCTGTAGTTTTTACATACGAAGAGATTTTTTCCTCAACTGATGGTTTCTCAGATTCAAATCTACTTGGGCATGGAACATATGGATCTGTCTACTATAGCCTCCTTCGTGATCAGGAAGTTGCTATTAAAANAATGACAGCTACAAAAACAAAAGAATTTATATCGGAGATAAAAGTTCTGTGCAAGGTTCATCATTCTAATCTGGTAGAATTGATTGGCTATGCAGCTAGTCATGATGATCTTTTCCTAGTCTATGAATATGCTCAGAAGGGTTCACTCAGAAGCCATTTGCATGATCCTCAAAATAAGGGTCATTCCCCACTTTCATGGATCATGAGAGTCCAGATTGTGCTTGATGCTGCTAGGGGCCTTGAATACATACATGAGCACACAAAAACTCATTATGTCCATCGTGATATCAAGACAAGCAACATTTTACTTGATGCTTCCTTTAGAGCAAAGATTTCAGATTTTGGGTTGGCAAAACTTGTTGGGAAAACAAATGAGGGAGAAATTTCAACTACCAAAGTTGTTGGTACATATGGATATCTTGCTCCAGAATACTTGAGTGACGGCCTTGCAACAACCAAAAGTGATGTGTATGCATTTGGTGTTGTCCTTTTTGAGATTATATCAGGAAAGGAGGCCATTATTCAAACAGATGGCATAGTGACGAAAAATCCTGAAAGACGATCACTGGCATCAATAATGTTGGCAGTTCTTAGGAACTCAACTGATTCCATGAGTATGTCAAGCATGAGAGATTACATTGATCCAAATATGATGAATCTGTATCCCCATGATTGTATGGCCATGTTGGCAAAGCAATGTGTGGATGATGATCCCATCTTACGACCGGATATGAAACAAGTGGTGATTTCCCTCTCACAGATTCTCCTGTCTTCTATTGAGTGGGAAGCAACACTAGCTGGGAATAGCCAGGTATTCAGTGGACTTGTTCAGGGAAGATAGCTGCACAGCAACATCTCTTCCACAGTTCCACTCACTACTTGAACAGGATTCTTTTTTTCTTTTCTTTTTCTTCTTTCTGTATCCTGCGTTATACCTTTTTATTTTTTTATTTTTTTTATTGGTTGATAATGGTGTGTATCCATAGGAGCAGAGACATGTGATGGACCTGATTGGCCAATATCTGTATTTTGGCCATTTATTTTCCTGAATGTCTTGAGAGCTATATCTTGATTTTGTTTAGATGCATTCCATTATGGAGGAGCTAATGATTCGATCACAAATGATGGCCCAAATTCTCAAATTGTCAACGTCATAATTTACACTTCAAATTTAATATA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01825	19169	24224	+

Gene family

Gene family	subfamily
Protein Kinases Family	PPC:1.1.3

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

biological_process
GO:0006468 protein phosphorylation

molecular_function

GO:0004672 protein kinase activity

GO:0005524 ATP binding

GO:0016772 transferase activity, transferring phosphorus-containing groups

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001825s00027393.1	PF01476.15	LysM	159	194	4.40E-05
Glyur001825s00027393.1	PF07714.12	Pkinase_Tyr	363	636	1.50E-48

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	7.235
SRR1783600	control	7.306
SRR1783602	moderate drought stress	10.942
SRR1811619	moderate drought stress	10.648

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	9.066
DRR006520	Root Summer glycyrrhizin high producing strain	8.582
DRR006521	Root Winter glycyrrhizin high producing strain	16.044
DRR006522	Root Winter glycyrrhizin high producing strain	15.142
DRR006523	Root Summer glycyrrhizin low producing strain	11.573
DRR006524	Root Summer glycyrrhizin low producing strain	11.706
DRR006525	Leaf Summer glycyrrhizin high producing strain	6.169
DRR006526	Leaf Summer glycyrrhizin high producing strain	6.272

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	21.917
SRR2868004	Drought Stress (root)	14.935
SRR2967015	Control (root)	20.546

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	4.159
SRR9715740	Leaf	6.222
SRR9715741	Leaf	4.339
SRR9715739	Root	3.660
SRR9715742	Root	9.683
SRR9715743	Root	7.595

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	5.497
SRR8749028	MeJA induced 9h	4.312
SRR8749029	MeJA induced 9h	2.311
SRR8749030	Uninduced	1.477
SRR8749031	Uninduced	0.180
SRR8749032	Uninduced	0.875

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	16.512
SRR8400027	Control - Root	21.013