Gene detail information of Glyur001824s00042141 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G14710.1 | 2.00E-33 | RNI-like superfamily protein |
| NR | XP_004488684.1 | 0 | PREDICTED: F-box/FBD/LRR-repeat protein At3g14710-like [Cicer arietinum] |
| Swissprot | tr|Q9LUC4|FDL43_ARATH | 7.00E-36 | F-box/FBD/LRR-repeat protein At3g14710 |
| trEMBL | tr|A0A072VA50|A0A072VA50_MEDTR | 0 | F-box/RNI/FBD-like domain protein {ECO:0000313|EMBL:KEH38486.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01824 | 49227 | 56149 | + |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
|
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001824s00042141.1 | PF08387.5 | FBD | 390 | 433 | 1.20E-11 |
| Glyur001824s00042141.1 | PF08387.5 | FBD | 477 | 521 | 1.50E-11 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 10.207 |
| SRR1783600 | control | 10.069 |
| SRR1783602 | moderate drought stress | 10.229 |
| SRR1811619 | moderate drought stress | 10.076 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 0.208 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 0.195 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 0.000 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 0.083 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 0.047 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 1.097 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.093 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 2.017 |
| SRR2868004 | Drought Stress (root) | 1.721 |
| SRR2967015 | Control (root) | 0.848 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.777 |
| SRR9715740 | Leaf | 1.246 |
| SRR9715741 | Leaf | 0.206 |
| SRR9715739 | Root | 5.555 |
| SRR9715742 | Root | 4.348 |
| SRR9715743 | Root | 4.392 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 0.019 |
| SRR8749028 | MeJA induced 9h | 0.043 |
| SRR8749029 | MeJA induced 9h | 0.033 |
| SRR8749030 | Uninduced | 0.268 |
| SRR8749031 | Uninduced | 0.000 |
| SRR8749032 | Uninduced | 0.000 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 10.882 |
| SRR8400027 | Control - Root | 7.211 |