Gene detail information of Glyur001820s00032865 |
Functional Annotation
| Database | Orthologs | E value | Annotation |
|---|---|---|---|
| TAIR | AT3G18970.1 | 4.00E-92 | mitochondrial editing factor 20 |
| NR | KHN17982.1 | 3.57E-165 | Pentatricopeptide repeat-containing protein [Glycine soja] |
| Swissprot | tr|Q9LJ69|PP243_ARATH | 4.00E-111 | Pentatricopeptide repeat-containing protein At3g18970 |
| trEMBL | tr|I1LU02|I1LU02_SOYBN | 1.00E-162 | Uncharacterized protein {ECO:0000313|EnsemblPlants:GLYMA12G31510.1} |
Sequence
| Transcript Sequence |
|---|
| Protein Sequence |
|---|
Location information (JBrowse)
| Scaffold | Start | End | Strand |
|---|---|---|---|
| Scaffold01820 | 52078 | 53019 | - |
Gene family
| Gene family | subfamily |
|---|---|
| -- | -- |
KEGG pathway
| KO | Enzyme | Enzyme ID | pathway | mapID |
|---|---|---|---|---|
| -- | -- | -- | -- | -- |
Gene Ontology
| Not hits found. |
Pfam domain
| Protein | Pfam accession | Pfam name | Alignment start | Alignment end | E-value |
|---|---|---|---|---|---|
| Glyur001820s00032865.1 | PF13041.1 | PPR_2 | 5 | 60 | 6.70E-08 |
| Glyur001820s00032865.1 | PF13041.1 | PPR_2 | 118 | 166 | 2.40E-10 |
Expression pattern
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR1783599 | control | 0.993 |
| SRR1783600 | control | 0.195 |
| SRR1783602 | moderate drought stress | 0.343 |
| SRR1811619 | moderate drought stress | 0.217 |
| SRA Experiment | Description | TPM |
|---|---|---|
| DRR006519 | Root Summer glycyrrhizin high producing strain | 1.724 |
| DRR006520 | Root Summer glycyrrhizin high producing strain | 3.059 |
| DRR006521 | Root Winter glycyrrhizin high producing strain | 1.303 |
| DRR006522 | Root Winter glycyrrhizin high producing strain | 1.206 |
| DRR006523 | Root Summer glycyrrhizin low producing strain | 1.661 |
| DRR006524 | Root Summer glycyrrhizin low producing strain | 1.668 |
| DRR006525 | Leaf Summer glycyrrhizin high producing strain | 0.972 |
| DRR006526 | Leaf Summer glycyrrhizin high producing strain | 1.217 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR2867873 | Salt Stress (root) | 1.564 |
| SRR2868004 | Drought Stress (root) | 1.090 |
| SRR2967015 | Control (root) | 0.957 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR9715738 | Leaf | 0.385 |
| SRR9715740 | Leaf | 1.225 |
| SRR9715741 | Leaf | 0.457 |
| SRR9715739 | Root | 0.162 |
| SRR9715742 | Root | 0.563 |
| SRR9715743 | Root | 0.199 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8749027 | MeJA induced 9h | 2.912 |
| SRR8749028 | MeJA induced 9h | 2.319 |
| SRR8749029 | MeJA induced 9h | 3.855 |
| SRR8749030 | Uninduced | 1.150 |
| SRR8749031 | Uninduced | 0.620 |
| SRR8749032 | Uninduced | 0.536 |
| SRA Experiment | Description | TPM |
|---|---|---|
| SRR8400026 | NaCl treatment - Root | 1.125 |
| SRR8400027 | Control - Root | 1.178 |