Gene detail

Gene detail information of Glyur001820s00032862.1

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT5G07670.1	1.00E-137	RNI-like superfamily protein
NR	XP_004516334.1	0	PREDICTED: F-box protein At5g07670-like [Cicer arietinum]
Swissprot	tr\|Q8VYT5\|FB254_ARATH	1.00E-168	F-box protein At5g07670
trEMBL	tr\|A0A072UUZ8\|A0A072UUZ8_MEDTR	0	F-box plant-like protein {ECO:0000313\|EMBL:KEH32853.1}

Sequence

Transcript Sequence

>Glyur001820s00032862.1
ATGCCATCCACAGCACCAACATCACCCAAAACGATGTCGTTTCAACCGGACCACCACCACAACAACAACAACAACAACCCTAGTAGCTTCGTTCCTTCTCCGCCATTGAAGAACTGGCTCAACAACCACATGGTTCTCGCCATGCAACTCCACTCCCTCTCCGACCCCAAATCCAAAACCCTAATCCCCAATTTCACCACCACCGACGACGACGGCGACGACGGAGAAGACCCAACACTCCGATTCTCCGACGAGATCCTTTTAAGAATCTTCTCGAAGCTCCCAGATTCACAGAGGAACTCCAATTCCCTCGTTTGCAAGCGGTGGTTGAATCTCCAAGGAAGACTCGTTCGTTCCCTGAGAGTATTCGATTGGAACTTCGTTCTATCTGGTAGGTTGATTCACAGATTCCCAAATCTCACACANGTCGATTTGGTTCACGCCTCTTTCGTCTCGCCACGAAACGGCGGCGTTTGGCTGAGTCACCGAGTCGCGTCGATGCACGTTGACTCGGNTTGGTGTTTCGGTTCCGAGAAGGAAGAGAAGAACCTGCTACCGGCTGAGGAGGTTGACAGGGGATTAAAAGAACTCGCTAGGGGGTGTCCGAGTTTACGGAAGCTGGAGGTAACCGGTGCGAGCGAGGAAGGTTTGGTGAGCGTAGGGAAAGAGTGTTGCACGTTGCAGGAGTTGGAGTTACAGAAGTGCAACGACGACGTTTTGCGGGGTGTTGGTGCGTGTGGGAATTTGCAAGTGGTGAAGCTAATTGGGAGTGTGTTAGGGTTCTATGAATCAGTGGTTTCTGATATTGGGCTTACGATTCTGGCCCAAGGGTGTAAGAGGCTAGTGAAGCTTGAACTTCAAGGGTGTGAAGGGAGTTTCGATGGGGTGAAAGCGATTGGGAAGTGTTGTGTTATGTTGGAGGAGTTAACGGTTGTGGATCATAGGATGGATGAAGGTTGGTTAGCGGGTTTGTCGTTTTGTGAGAATTTGAAGACTTTGAGGTTTGTGTCGTGTAAGGTTATTGATTCGAATCCTGGGTTGGTGGAGCATTTGGGTTTGTGTCCTGCGCTTGAGAGGTTGCAATTTCAGAAGTGTCTGTTAAGGGATAAGGATGCGGTTGGGGCTGTGTTTTCCGTTTGTAGGGCTGCTAAGGAGATTGTTCTTCAGGATTGTTGGGGGTTGGATGATGGTGTCTTCAGTTTGGCAGCTATTTGCAGGCGGGTAAGATTGTTTTCCTTAGAAGGATGCTCATTGCTTACAACAGAAGGTTTGGAGTCCGTAATTGATTCTTGGAAGGAGCTTCAGTGCCTTAGAGTTGTCTCATGTAAAAACATAAAGGATAGTGATATCTCTCCTGCACTCGCAACCTTGTTTACCACTCTCAAAGAGTTGAAATGGAGGCCAGATACCAAATACCTTCTGCCGTCA

Protein Sequence

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01820	42323	45424	-

Gene family

Gene family	subfamily
Ubiquitin Family	F-box

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function
GO:0005515 protein binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001820s00032862.1	PF12937.2	F-box-like	84	111	1.40E-06

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	11.056
SRR1783600	control	10.888
SRR1783602	moderate drought stress	17.156
SRR1811619	moderate drought stress	17.581

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	11.633
DRR006520	Root Summer glycyrrhizin high producing strain	11.293
DRR006521	Root Winter glycyrrhizin high producing strain	7.922
DRR006522	Root Winter glycyrrhizin high producing strain	7.967
DRR006523	Root Summer glycyrrhizin low producing strain	10.609
DRR006524	Root Summer glycyrrhizin low producing strain	10.258
DRR006525	Leaf Summer glycyrrhizin high producing strain	15.290
DRR006526	Leaf Summer glycyrrhizin high producing strain	14.931

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	23.793
SRR2868004	Drought Stress (root)	28.705
SRR2967015	Control (root)	31.487

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	16.153
SRR9715740	Leaf	22.828
SRR9715741	Leaf	19.611
SRR9715739	Root	5.212
SRR9715742	Root	9.866
SRR9715743	Root	9.147

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	10.005
SRR8749028	MeJA induced 9h	19.397
SRR8749029	MeJA induced 9h	8.866
SRR8749030	Uninduced	11.367
SRR8749031	Uninduced	17.237
SRR8749032	Uninduced	11.360

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	23.650
SRR8400027	Control - Root	21.270