Gene detail

Gene detail information of Glyur001819s00039496

Functional Annotation

Database	Orthologs	E value	Annotation
TAIR	AT4G19510.1	1.00E-57	Disease resistance protein (TIR-NBS-LRR class)
NR	XP_003605028.1	0	NBS-containing resistance-like protein [Medicago truncatula]
COG	YP_003509602.1	1.00E-07	SARP family transcriptional regulator [Stackebrandtia nassauensis DSM 44728]
Swissprot	tr\|Q40392\|TMVRN_NICGU	7.00E-43	TMV resistance protein N
trEMBL	tr\|G7JVS3\|G7JVS3_MEDTR	0	Disease resistance protein (TIR-NBS-LRR class), putative {ECO:0000313\|EMBL:AES87225.1}

Sequence

Transcript Sequence

>Glyur001819s00039496.1
TNTGAATCTGAGCTTATAGAGGAGATTGTTAAAGACACATTTACTAAAGTGGCTCCTGCGCCTGTACAAATCAACCACACAGTTGGATTTGATGCCCGCTTTGAAGATNTGAAATCTTTTTTAGATATTGAATCTAATGATACCATTCGTGTGTTAGGAATTTATGGANCTGGTGGAATAGGTAAAACCGCATTTGCTGCCTATTTGTATAACAAGACCAGGCATTATTTTGATGCTGCAGCTTTTCTTCTTCGTGTCAGAGAAGAATCAAACAAAAGCATCAAAGGCCTGGAAGAGCTCCAAAAGACACTTGTATCTCAGATGGGTGAGGAGATAGAAATAGTGGGAAGTACATTTAAAGGAAGCTCTGAAATCATACGCAAGCCTGGCAAGAGAAGAGTCCTTCTGGTTTTGGATGATGTTGATACCATAGAAAAATTGAGATCACTGGCTGGAGGACGTGATTGGTTTAGACCTGGTAGTAGGATCATAATAACAACAAGGGATGCAGCTGTGCTAGATAATGGCAATGATTTGGAAATTGAAAAATACAAAATGGAGGAGCTGAATGATCATGACTCTCTTGAACTCTTCTGTTGGAATGCCTTTGATATGAGCAGACCTGCAGAAAACTTTGAAAATATCTGTACTCATGCAGTGAGTTATGCAAAGGGTATACCGTTGGCTTTATGTGTAGTAGGGTCCAATTTGAAGGGTCGAAGCATAGAGGAATGGGAAATTGAATTGGGCAAATATAGGAAGGTTCCAGATGCTGGTATTCAAGGTGTACTAGAAACAAGCTACTATAGTCTGTCTGAGCTAGAGAAGAAAATATTCTTGGATTGTGCTTGCTTCTTCAGAGGGGAGAAATGGGGGAGCGGTGAAATTGAAGGAATAATGCTTCATCCTCCTATGCATGAAGTAGTAGATCAATGGGCTAATGCTGCTTTTGAGAAGATGAGGAACCTCAAAATTCTTATTGTTCGGAATGTAACATTTTCAACAGGACCTAGTTATTTGCCGAATAGTTTACGACTACTTGACTGGATGGGGTTCCCTTCAAAGTCCTTCCCACCTGATTTTTATCCNGAGAAAATTGTTGACTTCAAGTTATCTCATAGTCCTCTGATGTTGGCAAAGCCACTTCAGACATTTGAGGAATTGACATTCATCAATCTCTCCCAATGTCAATCCATATCTCAACTACCTGATCTGTCTGGAGCAAAAAACTTAAGAGTGTTGACACTTGACAAATGCCATAAATTGGTAGGGTTTGATAAATCCATTCGATTATTTATGCCNAAACTTGTCTATTTAAGTGCCTCAGAGTGCACCATGCTCGAAAGTTTTGTGGCAAGAATGTATTTGCCATCTCTCGAGGTGCTTTCATTTAACTTGTGCACAAGACTTGACCACTTCCCAGATGTAATGCGAAAGATGGATAAGCCGTTAAAGATTCACATGAGAAATACTGCTATTAAAGAGTTCCCAGAGTCCATTGGTAAACTTACTGGGCTTGAGTATGTAGACTTTTCAACATGCAAACGAATCAGAGATCTATCAAGAAGCTTCTTATTGTTGCCAAAACTCATCACGTTAAAAGTTGATGGGTGTTCTCAACTTCGAGATTCATTCAAAAGGTTCAAAGAGAGTTATTCAGTAGGAAATGGCTGCCCAAATTTGAAGGAACTATGTTTCAGCAAGGCTAATTTGTCATATGAAGATCTTCACATAATTCTTGAAATATTCCCGAAATTGGAACATTTGGATGTGTCGCACAACGGATTTGTATCCCTCCCAGATTGCATCAAAGGATCTTTGCAGTTGAAAAGTCTTGATATAAGTTTTTGTAGGAATCTTATGGACATTCCAGAACTTCCACCAAGTATTCAGACAGTAGATGCAAGATACTGTCAATCCTTAATTCCAAAAGCATCAAGTGTGCTATGGTCTCAGGTTCGTAAAGAGACAGAAAGAATACAAGTTGTGATGCCAAAAACGGAAATTCCAGATTGGTTCGACTGTGTTGGCAGTGACGATATTCCTCTTTCCTGGGCTCGCCGGAAGTTCCCTGTTGTTACATTAGCATTTGAGTTCGGGGAAGTCAAAGAGAATGACGAGGTAAAAATGGACACATTACCTGGAATGGTGTCAGATAATTCTCACATTGTTGGTCTCCATTTGTTTATAGATGGCCAAGAAATATGTCACAAAGATTACCATTGTTTCTGGGTTGGGGAACATCATGTGCTGCTGTGTGATCTTAGGACTTTGTTCAATGATGAAGAGTGGCAGGGTCTTGATGCACGTGTTGGAGATAATTGGAAGGCCATTCAGGTTCAGTGTGAATCACACTTGGTTTTGAGTCANTGGGGACTTTATGTGCACAAACACAAAACAAACACCATTCATGACAACATCATATTTAGTTTTCCCAATTCTAAGAACCACATGCCATCATCATGTTTGGTTCCAAAATCGTCTCCAAATCAGAAAATAAGACACATACATAATCTTGATCTAGTAGAAGCATTTGGCCAGTATTTGAATACTTTTAAATCAGAACAATCCAACTCTGTTGTAGACGAATTATCGAGGTGGTGCAGGAATGCCAAGGCTCATGTTAGAGGGGCCTCTATCTATGGGGCAAGTTTAATGCAAGAGCANGAAGAATGTGTGTGGGATGTGGCCCAGATTTTGNAGATGTTGATGGGGAACATGGCAACACATATTTGTGATGCAAAATTTCAAAGTGCAGGGAAATTGGTGGTAGAATTATTGACGACAGGGGCACAACCTATGAAGGAAAAAGGCCATGAGGTGTTGCACATCAATATGAGTATGCCCATTATACTAGAGGAATGTGAATGCCATTTTCACCCTTGTAGAGGTTTAGCGNAGGCACCAAGCCGTCGCTATTGGGGAAGCGTGGAGTTAGAAGAAGGAAACCCACTTGTGNGGAGAATTTGGAAAGGCAAAAAAGCCTTTGTTCTATTGAAATGCAAGCATTGTTGTATAGGGGAAGAAGCTTCTTCAAGCTCTGGCCATGTTGAATCTCTGGGGGAAGAAGAAGAGTACAATGATCCTGTAGTGGGAGAATTACTGAGGAGGGTAGAGCAAGATGTAATGAGTAGGTTGTTGAATAGATCTCAGAGGAAGTTGAAGGCATCTATTGTTCCAATGGATGTACCAGTTTCTGACAAATATATGATGGAAACAGCAATCATCAGAGGACAAGAGAGGTTGGGGAGGTTGGGATCCAANTTCAACAAGACACCTTATGGGAAGTTGAGGGTGGAGCTTGATGCTCAATGTGCTATTACCGTGCAACATGAGTTGAGGATGGAGCAGGATGGTCAGAGTCAGAACATGTAACATGAGTTGGGAGTGAAGCACGATGCTCTGAATCAGAAGAAGTTGAGTTGGACCAAGATTCTTGTTGGGTGGATTAGACGCTCCTCATGATGTTGGGGAAGTAGAATTGGTTCAGATGAAATTCTTGTTGGACNCTTCAGGGTTTGAATGTCCTCCAAAGATTTGAGAAAGCATTTGTAAAGGAGGACAAACTACAGTGCATTTGTNAGATGCATTCTGTTCTTATTTGACTCGATGAATATTTTTGTAAGATGTTATCCATTTGGTGTGATATGAAACATTTGGAAGGAATAAGGTTGTTGTTTCCA

Protein Sequence

>Glyur001819s00039496.1
XESELIEEIVKDTFTKVAPAPVQINHTVGFDARFEDXKSFLDIESNDTIRVLGIYGXGGIGKTAFAAYLYNKTRHYFDAAAFLLRVREESNKSIKGLEELQKTLVSQMGEEIEIVGSTFKGSSEIIRKPGKRRVLLVLDDVDTIEKLRSLAGGRDWFRPGSRIIITTRDAAVLDNGNDLEIEKYKMEELNDHDSLELFCWNAFDMSRPAENFENICTHAVSYAKGIPLALCVVGSNLKGRSIEEWEIELGKYRKVPDAGIQGVLETSYYSLSELEKKIFLDCACFFRGEKWGSGEIEGIMLHPPMHEVVDQWANAAFEKMRNLKILIVRNVTFSTGPSYLPNSLRLLDWMGFPSKSFPPDFYPEKIVDFKLSHSPLMLAKPLQTFEELTFINLSQCQSISQLPDLSGAKNLRVLTLDKCHKLVGFDKSIRLFMPKLVYLSASECTMLESFVARMYLPSLEVLSFNLCTRLDHFPDVMRKMDKPLKIHMRNTAIKEFPESIGKLTGLEYVDFSTCKRIRDLSRSFLLLPKLITLKVDGCSQLRDSFKRFKESYSVGNGCPNLKELCFSKANLSYEDLHIILEIFPKLEHLDVSHNGFVSLPDCIKGSLQLKSLDISFCRNLMDIPELPPSIQTVDARYCQSLIPKASSVLWSQVRKETERIQVVMPKTEIPDWFDCVGSDDIPLSWARRKFPVVTLAFEFGEVKENDEVKMDTLPGMVSDNSHIVGLHLFIDGQEICHKDYHCFWVGEHHVLLCDLRTLFNDEEWQGLDARVGDNWKAIQVQCESHLVLSXWGLYVHKHKTNTIHDNIIFSFPNSKNHMPSSCLVPKSSPNQKIRHIHNLDLVEAFGQYLNTFKSEQSNSVVDELSRWCRNAKAHVRGASIYGASLMQEXEECVWDVAQILXMLMGNMATHICDAKFQSAGKLVVELLTTGAQPMKEKGHEVLHINMSMPIILEECECHFHPCRGLAXAPSRRYWGSVELEEGNPLVXRIWKGKKAFVLLKCKHCCIGEEASSSSGHVESLGEEEEYNDPVVGELLRRVEQDVMSRLLNRSQRKLKASIVPMDVPVSDKYMMETAIIRGQERLGRLGSXFNKTPYGKLRVELDAQCAITVQHELRMEQDGQSQNM

Location information (JBrowse)

Scaffold	Start	End	Strand
Scaffold01819	26777	32074	-

Gene family

Gene family	subfamily
--	--

KEGG pathway

KO	Enzyme	Enzyme ID	pathway	mapID
--	--	--	--	--

Gene Ontology

molecular_function

GO:0005515 protein binding

GO:0043531 ADP binding

Pfam domain

Protein	Pfam accession	Pfam name	Alignment start	Alignment end	E-value
Glyur001819s00039496.1	PF00931.17	NB-ARC	44	292	2.00E-35
Glyur001819s00039496.1	PF00560.28	LRR_1	585	603	0.16

Expression pattern

SRP053019

SRA Experiment	Description	TPM
SRR1783599	control	3.694
SRR1783600	control	3.675
SRR1783602	moderate drought stress	2.906
SRR1811619	moderate drought stress	2.864

DRP000996

SRA Experiment	Description	TPM
DRR006519	Root Summer glycyrrhizin high producing strain	6.677
DRR006520	Root Summer glycyrrhizin high producing strain	6.701
DRR006521	Root Winter glycyrrhizin high producing strain	0.507
DRR006522	Root Winter glycyrrhizin high producing strain	0.443
DRR006523	Root Summer glycyrrhizin low producing strain	4.339
DRR006524	Root Summer glycyrrhizin low producing strain	4.200
DRR006525	Leaf Summer glycyrrhizin high producing strain	0.977
DRR006526	Leaf Summer glycyrrhizin high producing strain	1.030

SRP065514

SRA Experiment	Description	TPM
SRR2867873	Salt Stress (root)	10.365
SRR2868004	Drought Stress (root)	17.421
SRR2967015	Control (root)	9.775

SRP215420

SRA Experiment	Description	TPM
SRR9715738	Leaf	29.924
SRR9715740	Leaf	13.438
SRR9715741	Leaf	23.633
SRR9715739	Root	6.606
SRR9715742	Root	26.575
SRR9715743	Root	22.771

SRP188776

SRA Experiment	Description	TPM
SRR8749027	MeJA induced 9h	64.481
SRR8749028	MeJA induced 9h	74.719
SRR8749029	MeJA induced 9h	68.798
SRR8749030	Uninduced	55.074
SRR8749031	Uninduced	20.342
SRR8749032	Uninduced	16.519

SRP175571

SRA Experiment	Description	TPM
SRR8400026	NaCl treatment - Root	7.798
SRR8400027	Control - Root	11.731